For constant angular velocity ω, g-force is proportional to the radius r: ##a=\omega^2 r##
Your "height" difference would be like a steep mountain, and air would be very thin at the small end.
The Coriolis force will give some deviation from a straight line - but you should reduce the "height" difference to get nicely flowing rivers.
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Which direction (small end to large end or the reverse) must they flow?
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"Down", towards the larger end.
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Or will the difference in g drive them from one end to the other?
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Not the difference, the actual acceleration does this.
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3. Will the Coriolis force be sufficient to stir the interior atmosphere?
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If you manage to get wind in some way, maybe. Otherwise, the whole air will follow the rotation of the cylinder without significant effects.
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4. If you jump from a large building in the interior would you float free until something turning around on a straight vector (to/from where) smacked you?
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Only if you run at the velocity of the structure (as seen from outside), which is not likely for such a big cylinder. You would fall downwards, with some sidewards motion if the height is so large that it will kill you anyway (this happens on earth, too - for a free fall of ~100m, the deflection is of the order of 1cm if I remember correctly).
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If people built buildings on the exterior of the tube the g force would be greater the farther the floor from the center of rotation; right?
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This is true on the inside, too. See my first paragraph how g-force changes with height.