Peptide chains with ER sequences

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In summary, the conversation discusses the task of drawing peptide chains associated with the endoplasmic reticulum (ER) based on the presence or absence of ER and stop transfer signals. The ER is a cellular organelle involved in protein synthesis and modification. Figures and resources are provided to help understand the positioning of the peptides on either side of the ER. The key questions to ask when analyzing a peptide are whether an ER signal and stop transfer signal are present, their location, and how many are present. These factors determine the integration of the protein into the ER membrane.
  • #1
lexia925
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I have been given 5 peptide chains with ER sequencs. I am supposed to draw the chain as it would be associated with the ER. But I don't understand by looking at one with just an N-terminal and Er signal how it should be positioned. How can you tell just by the presence (or absence of) an ER signal and stop transfer which end the N-terminal is and which is the C- terminal? :confused:
 
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  • #2
Could you please expand on the ER - what is ER?
 
  • #3
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What we're supposed to do is figure out how to draw the protien on either side of the ER depending on if there is an ER signal or a stop transfer signal on it. Thats where i get lost.
 
  • #5
Look carefully at this picture

http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2224

there a signal peptide and a stop signal - What happen to the peptide?

Look a these two figures now
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2225
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2212

Different location of the signal peptide results in different events.

Also compare these figures
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2225
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2224
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2227

Same kind of results but there two differences - Can you spot the differences?

Just to summarize question you need to ask when analyzing your peptide and the figures:
1. Is a ER signal peptide present?
2. If so, where is the signal peptide located (N-terminus, COOH-terminus or inside the peptide)?
3. If so, how many ER signa are present? Tell you how many transmembrane domain will be integrate in the membrane.
4. Is a stop transfer signal sequence present? Tell you if the protein will be integrated in the membrane
5. If so, how many stop transfer signal sequence and where the signal sequence located?
 

What are peptide chains with ER sequences?

Peptide chains with ER sequences are a type of protein that contains specific amino acid sequences that target them to the endoplasmic reticulum (ER) for processing and folding.

How are peptide chains with ER sequences important in cellular function?

These peptide chains play a crucial role in the proper functioning of cells by facilitating the correct folding and modification of proteins within the ER. This is essential for the cell to perform vital processes such as protein synthesis and transportation.

How are peptide chains with ER sequences synthesized?

Peptide chains with ER sequences are synthesized by ribosomes on the rough ER. As the peptide chain is being synthesized, the ER sequence targets it to the ER for further processing and modification.

What is the significance of the ER sequence in peptide chains?

The ER sequence acts as a signal for the cell to direct the peptide chain to the ER. This is crucial because it ensures that the protein is correctly folded and modified before being transported to its final destination within the cell or outside of it.

What happens if a peptide chain lacks an ER sequence?

If a peptide chain lacks an ER sequence, it will not be properly targeted to the ER. This can result in misfolded or non-functional proteins, which can lead to various cellular malfunctions and diseases.

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