How can DNA bend or circularize with a persistence length of 150 bp?

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In summary, the persistence length of double stranded DNA is approximately 150 bp. However, there is confusion about how shorter DNA molecules, such as those around 100 bp, can bend or circularize. The definition of persistence length is the distance over which the direction of a polymer segment persists due to limited flexibility. The ORI, or origin of replication, is not directly relevant to the topic. The persistence length for DNA is roughly 50 nm, or ~150 bp, and it requires a lot of energy to bend longer chains. However, nucleosomes can bend about one persistence length of DNA in two full turns. It is possible to bend DNA further with binding energies, such as wrapping it around histones.
  • #1
karthik3k
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The persistence length of a double stranded DNA is reported to be ~ 150 bp.


If so how can DNA of ~100 bp and less bend or circularize?

Or is the definition of persistence length wrong ?
 
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  • #2
What is the definition of persistence length?

The ORI is pretty long itself, so I'd suspect 100 bp would be too short.
 
  • #3
whats ORI ?
 
  • #4
What's the definition of persistence length?

The ori is the origin of replication. I have no idea if it's relevant to the topic, because I'm not sure what "persistence length" means.
 
  • #5
from the net:
Persistence length (P): A lengthscale for polymer stiffness. The distance over which the direction of a polymer segment persists, in the time or ensemble average, owing to limited flexibility of the polymer. For DNA the persistence length is ~50 nm, i.e., ~150 bp. Chains Ł P in length require a lot of work (free energy) to bend much, yet in nucleosomes roughly one persistence length of DNA is bent in nearly two full turns.
Or: the length of the DNA along which a thermally excited bend of 1 radian typically occurs (the DNA is essentially straight over shorter distances). Since the persistance length is based on just thermal fluxuations, it should be possible to bend it further with binding energies for instance (wrapping DNA around histones).
 

1. What is DNA and what is its role in the body?

DNA stands for Deoxyribonucleic acid and it is the genetic material that carries the instructions for the development, function, and reproduction of all living organisms. It is found in the cells of all living organisms and plays a crucial role in determining our physical characteristics and traits.

2. What is the structure of DNA?

DNA has a double-helix structure, which consists of two long strands of nucleotides twisted together. Each nucleotide contains a sugar molecule, a phosphate group, and one of four nitrogenous bases - adenine, thymine, guanine, and cytosine. Adenine always pairs with thymine, and guanine always pairs with cytosine, forming the rungs of the DNA ladder.

3. What is persistence length in relation to DNA?

Persistence length is a measure of the stiffness of a polymer, such as DNA. In DNA, it refers to the length over which the molecule maintains its overall structure and resists bending. The persistence length of DNA is approximately 50 nanometers, which means that it can only bend smoothly over distances of 50 nanometers or less before becoming rigid.

4. How is persistence length of DNA important in understanding its biological functions?

The persistence length of DNA is important in understanding how it can fit into the small spaces within cells and how it can bend and twist to carry out its biological functions. For example, DNA needs to be able to bend and loop in order to fit into the cell nucleus, and the persistence length determines how much it can bend without losing its structure and function.

5. What factors can affect the persistence length of DNA?

The persistence length of DNA can be affected by factors such as temperature, salt concentration, and the presence of proteins. Changes in these factors can alter the stiffness and flexibility of DNA, which can impact its biological functions. In addition, mutations in the DNA sequence can also affect its persistence length and overall structure.

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