Detect/check flexible/rotatable bonds

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In summary: However, in general, single bonds are rotatable while multiple bonds have limited flexibility due to pi bond breakage.In summary, the best method for determining the rigidity of bonds in a molecule is to look at its infrared spectrum or use molecular modelling programs. Shorter bonds and higher bond energies usually indicate greater stiffness, while steric interactions can also play a role in determining bond angles and flexibility. Single bonds are typically rotatable while multiple bonds have limited flexibility.
  • #1
hefeweizen
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Hi,

what is the best method or algorithm or where could I find information for, given a certain molecule, know what bonds are not rigid ? For instance in Ph-CH2-Ph, the CH2 carbon would you consider as rigid or as flexible ?

Thanks
 
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  • #2
Single bonds are generally rotatable and multiple bonds are not. Multiple bonds can twist somewhat but not by much before the pi bonds will break. 'Rigidity' is not a well-defined term and you won't get an answer to that question on this Forum unless you are a bit more specific. You can talk about certain bonds being 'stiffer' than other bonds. This is related to steric interactions, bond length and bond strength.

Most materials will be active in the infrared spectrum. The energy of the infrared band is the energy of bends, twists, rocks and other intramolecular motions (not spinning or translating). An examination of the infrared spectrum of the species of interest will give you some insight into the energies of these twisting, bending, rocking and stretching motions. The intensities will tell you about the likelihood of the absorption of these energies.

Molecular modelling programs can give you a calculated infrared spectrum if none exist or you can't find one for your specific compound. You can also wing it by examination of the bond length of the species in question, the mass of the substituents and the bonding energy. Shorter bonds are usually stiffer than longer bonds and higher bond energies usually infer the same.
 
  • #3
In this particular example, the steric interaction between two "Ph" groups might dictate the actual bond angles and "flexibility" of the bonds.
 

1. What are flexible/rotatable bonds?

Flexible/rotatable bonds are chemical bonds that allow movement or rotation between two atoms or groups of atoms in a molecule. These bonds are usually single bonds, such as C-C or C-H, and are important for the flexibility and conformational changes of molecules.

2. Why is it important to detect or check flexible/rotatable bonds?

Detecting or checking flexible/rotatable bonds is important in understanding the physical and chemical properties of molecules. It can help in predicting the stability, reactivity, and behavior of a molecule. Additionally, it is crucial in drug design and development, as flexible/rotatable bonds can affect the binding affinity and potency of a drug molecule.

3. How can flexible/rotatable bonds be detected or checked?

There are several methods for detecting or checking flexible/rotatable bonds, including computational methods, spectroscopic techniques, and X-ray crystallography. Computational methods, such as molecular dynamics simulations, can provide information about the flexibility and rotation of bonds in a molecule. Spectroscopic techniques, such as NMR and IR, can also provide insights into the movement of bonds. X-ray crystallography can directly show the 3D structure and conformation of a molecule, including the rotation of bonds.

4. Can flexible/rotatable bonds be controlled or manipulated?

Yes, flexible/rotatable bonds can be controlled or manipulated through various chemical reactions. For example, a double bond can be converted to a single bond, decreasing the flexibility of a molecule. Additionally, physical methods such as applying external pressure or changing the temperature can also affect the flexibility and rotation of bonds.

5. What are some applications of understanding flexible/rotatable bonds in research?

Understanding flexible/rotatable bonds has many applications in research, particularly in drug design, materials science, and organic synthesis. In drug design, it is crucial to optimize the flexibility of a molecule to improve its binding affinity and selectivity. In materials science, the control of flexible/rotatable bonds can lead to the development of new materials with unique properties. In organic synthesis, the manipulation of flexible/rotatable bonds can allow for the synthesis of complex molecules with specific conformations and functions.

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