The nuclei of atoms can be transmuted via interaction with other nuclei or high energy photons, but that means producing radioactivity in the process. Phototransmutation requires gamma-rays. Transmutation by charged nuclei or particles like protons, deuterons, . . . . requires energies in the MeV range, and as charged particle pass through matter (atoms) they ionize atoms and produce brehmsstrahlung and X-ray radiation. Free neutrons can be absorbed by nuclear matter, but usually a gamma ray is given off spontaneously after the capture, and then the nucleus would be radioactive, unless the initial nucleus happens to be 1 amu below a stable nuclide [or results in fission to rapidly decaying products].