Both nucleotide and aa sequence under each other

  • Thread starter Thread starter sotellme
  • Start date Start date
  • Tags Tags
    Sequence
Click For Summary
SUMMARY

The discussion centers on the need to display nucleotide sequences alongside their corresponding amino acid (aa) sequences for clarity in genetic analysis. The user seeks a method to align these sequences, specifically mentioning the use of the ExPASy translate tool with the "include nucleotide sequence" option. This tool facilitates the translation of nucleotide sequences into their respective amino acids, streamlining the process of understanding gene relationships. The challenge arises from the separation of nucleotide and protein sequences across different databases.

PREREQUISITES
  • Understanding of nucleotide and amino acid sequences
  • Familiarity with genetic translation tools
  • Basic knowledge of bioinformatics databases
  • Experience using the ExPASy translate tool
NEXT STEPS
  • Explore advanced features of the ExPASy translate tool
  • Learn about other genetic translation tools like Geneious or Bioconductor
  • Research methods for visualizing nucleotide and protein sequences together
  • Investigate the use of software for batch processing of sequence translations
USEFUL FOR

This discussion is beneficial for bioinformaticians, molecular biologists, and researchers involved in genetic analysis who require efficient methods for correlating nucleotide and amino acid sequences.

sotellme
Messages
75
Reaction score
0
both nucleotide and aa sequence under each other...

hello everybody!

i wonder what can i do to get my nucleotide sequence and aa of a gene being translated under each other so i can have a whole picture of which nucleotide belongs to the aa and which aa belongs to the nucleotide in a paper?

for example:

atg ttt tta ...
M P L ...

this would be of great help, since the aa and protein sequence of a gene are in different places (databanks and even in the same databank) and i waste my time on translate every code into its aa.

hope you get my point!
thanks a lot!
 
Biology news on Phys.org

Similar threads

Replies
4
Views
3K
  • · Replies 15 ·
Replies
15
Views
4K
  • · Replies 3 ·
Replies
3
Views
3K
Replies
20
Views
6K
  • · Replies 6 ·
Replies
6
Views
3K
  • · Replies 12 ·
Replies
12
Views
5K
  • · Replies 8 ·
Replies
8
Views
6K
  • · Replies 8 ·
Replies
8
Views
4K
Replies
12
Views
6K
  • · Replies 2 ·
Replies
2
Views
2K