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16S rRNA sequence information to identify organisms

by University
Tags: identify, information, organisms, rrna, sequence
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University
#1
Nov26-12, 05:55 AM
P: 34
Hi All,
I have an unknown 16S ribosomal RNA gene sequence below that I am trying to identify. I know its a bacteria but anyone know of a site/program online that allows you to enter the sequence below and it gives the likely close match?




TAGGGAATCTTCCGCAATGGACGAAAGTCTGACGGA
GCAACGCCGCGTGAACGATGAAGGCCTTCGGGTCGT
AAAGTTCTGTTGTTAGGGAAGAACAAGTATCGGAGTA
ACTGCCGGTACCTTGACGGTACCTAACCAGAAAGCC
ACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT
AGGTGGCAAGCGTTGTCCGGAATTATTGGGCGTAAAG
CGCGCGCAGGCGGTCCTTTAAGTCTGATGTGAAAGC
CCACGGCTCAACCGTGGAGGGTCATTGGAAACTGGG
GGACTTGAGTACAGAAGAGGAAAGCGGAATTCCACGT
GTAGCGGTGAAATGCGTAGAGATGTGGAGGAACACCA
GTGGCGAAGGCGGCTTTCTGGTCTGTAACTGACGCTG
AGGCGCGAAAGCGTGGGGAGCAAACA
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mishrashubham
#2
Nov26-12, 08:44 AM
P: 605
You can NCBI's BLAST

http://blast.ncbi.nlm.nih.gov/


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