Atom Size Visualization Animation

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Discussion Overview

The discussion centers around the visualization of individual atoms, specifically seeking animations that depict the size of an atom without reference to its nucleus. Participants explore the scale of atoms in relation to larger biological structures and discuss the limitations of visualizing such small entities.

Discussion Character

  • Exploratory
  • Technical explanation
  • Conceptual clarification

Main Points Raised

  • One participant inquires about visualization animations of individual atoms, distinct from cellular animations.
  • Another participant provides comparative sizes of various biological entities, noting that atoms are significantly smaller, typically ranging from 1-4 Å (0.1 to 0.4 nm).
  • It is mentioned that the wavelength of visible light is much larger than the size of atoms, making direct observation impossible without specialized equipment like electron microscopes.
  • A discussion on the nature of atomic interactions suggests that while atoms can be modeled, they cannot be visually represented in a traditional sense.
  • Methods for estimating atomic size are proposed, including X-ray diffraction and calculations based on mass, density, and Avogadro's number.
  • A participant raises a question about observing Brownian motion despite the small size of atoms, prompting a response about the cumulative effect of many atoms colliding with larger particles.

Areas of Agreement / Disagreement

Participants express varying viewpoints on the visualization of atoms and the implications of their size, with no consensus reached on the best methods for representing atomic dimensions or the feasibility of direct observation.

Contextual Notes

The discussion highlights limitations in visualizing atomic structures and the dependence on models and indirect measurements to infer atomic size. There is also an acknowledgment of the challenges in observing phenomena like Brownian motion in relation to atomic scale.

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Are there any visualization animations of the size of an individual atom, not in respect to the nucleus, just an atom?
I saw an animation where I was zooming into a cell, but is there one for an atom.
www.cellsalive.com That's the cell animation one, click on how big.
 
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Examples of cell and microbe sizes:

Viruses . . . . . . . . . . <= 1 um
Staphlococcus . . . . . . . . 1 um
Bacteria (E. coli) . . . . . . 2 um
Red Blood Cell . . . . . . . 8 um
Elodea epidermal cell . 65 um
Amoeba . . . . . . . . . . 700 um

These are large structures compared to atoms, which have sizes on the order of 1-4 Å, or 0.1 to 0.4 nm, or 1E-4 to 4E-4 microns. ( 1 Å = 10^-8 cm).

Now, the wavelength of visible light is in the range of 4000 (blue) to 7000 (red) Å, or 400 to 700 nm or 0.4 to 0.7 microns. The atoms, the source of photons, are much smaller than the wave length of the photons by at least 3 orders of magnitude. So we cannot 'see' atoms.

And, IIRC, one needs an electron microscope to see viruses and bacteria, because they are smaller that light wave lengths. Electrons can be accelerated to energies such that their wavelengths (de Broglie wavelength) are much smaller than those of visible light.

And nucleons and electrons are even smaller - so we definitely cannot see them either.

The only way we can detect atoms, nucleons, and electrons is by virture of their interactions. The interactions can be modeled, and those models can give us an idea of what a 'structure' might be like. For many purposes, the atom, nucleon or electron is like a point, but since it has mass, we might imagine a sphere with its pointwise symmetry.

Outside the atom, electrons behave like particles or waves. Inside the atom, electrons are thought of as waves, and their 'precise' location is meaningless. Quantum/wave mechanics gives us an idea of 'region of influence' of an electron in an atom. Scattering of electrons and X-rays by atoms gives us some idea of how the atomic structure influences them, but that does not provide an 'image' of the atom.

How might we then determine a size of an atom. Well, in solids, X-ray diffraction can give us an idea of the interatomic spacing. In addition, we can take a collection of atoms and knowing mass and density, which give us volume, and knowing Avogadro's number, we can get a size of an atom of a particular element. Introductory textbooks in chemistry and material science should have discussions on determining atomic size.
 
I read that brownian motion can be observed when molecules of water jostle pollen grains floating in a vessel , how is this possible if atoms are so much smaller than any visible particles?
 
Well, when you have 1,000 atoms hitting you this way, some kinetic energy is created. Now, depending on how many other particles are hitting the pollen on the other side, depends on how many particles are colliding on the other side. For example, a vacuum works, because there are particles colliding on one side, and none on the other. Brownian motion.
 

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