Well, I think it would be a little more precise to say that all digital photos are taken with monochrome sensors that one way or another are alternatly filtered to allow one color at a time to pass through. Some cameras take 3 (or 4, with a luminance image) separate photos, mechanically alternating colored filters. The photos are combined later into a single color photo. Other cameras have a matrix of colored filters attached to the sensor to alternate colors on one sensor. The software controlling the camera knows which pixels are which colors and assigns them accordingly. Obvously, this method reduces the effective resolution of the sensor. It's called a Bayer Matrix: http://www.cyanogen.com/help/maxdslr/One-Shot_Color_and_the_Bayer_Array.htm
I don't know for sure, but I would guess that, as warren implies, most space probes and telescopes have "color" sensors that use the Bayer matrix.
Most photos taken through most cameras require color calibration unless careful control of the lighting is available. For the Mars rovers, for example, color calibration is a major problem (it
is the Red Planet...) and as such the rovers were sent up with a sundial with color calibration spots on it so that the colors can easily calibrated once the photos are sent to Earth.
http://marsrovers.nasa.gov/mission/ spacecraft _instru_calibr.html
It may be beyond the scope of what you were asking, but some pictures you see use "synthetic" color - the filters used to provide the color aren't actually full-color filters, but filters that only allow a very specific single frequency of light through, such as the hydrogen alpha emission line (a specific frequency of red). Here's one famous Hubble image and how it was taken:
http://www.pbs.org/wgbh/nova/origins/hubble.html