Baluncore said:
I assumed there would be air pinched between the tube and capsule that would involve compression and heating, to the same extent that the rarefied air at the front of the traveling atmospheric bolt would have a leading layer of compressed and heated tube air.
Certainly there would be some of that, but exactly how much depends on the details of the capsule. Musk's original design pitched the idea that the front of the capsule would essentially be a turbine inlet that ingests a lot of the incoming air and uses it to provide some kind of power to the capsule. It was not a well-fleshed-out part of the idea so the details were a bit sketchy. However, if a decent portion of that air is ingested, there would be very little actual compression in front of the vehicle or around the edges.
Air moving around the edges generally would speed up, not slow down, which means it would not be compressing but actually becoming more rarefied. Now, if that acceleration was enough to produce locally sonic (or supersonic flow, if the capsule shape supported it), then you could end up with shocks that locally compress the flow, but the overall effect would be a rarefaction.
Baluncore said:
That leading layer would radiate, and gradually mix into the following atmospheric wall, which would regulate the temperature profile by speed of sound.
It is not clear to me what you mean by this. Yes, "information" about the moving vehicle travels upstream and downstream of it at the speed of sound, but for a constant-speed vehicle, this is a steady, continuous process. You would have a more or less steady and smoothly-varying compressed region in the front of the vehicle. The unsteady portion of the problem is when it would encounter the shock generated by the rupture, but given the ingestion of the air by the vehicle, the effect of this leading compressed region on my previous rough calculations is likely to be fairly minor.
Baluncore said:
While at the same time … The burst occurs and the leading wall of the atmospheric bolt expands into the tube, cooling and slowing slightly.
The rarefied still air in the tube is compressed and heated by the advancing wall, so part of it can keep ahead of the atmospheric bolt that follows immediately.
Mass can only pass through a given sized hole with a given pressure ratio and temperature so fast. That "atmospheric bolt" is not going to be at atmospheric pressure or temperature because it had to accelerate to that given speed, which necessitates a temperature and pressure drop. The atmosphere is effectively infinite volume compared the the volume of the tube, so the slowing effect will be completely negligible and what is produced is a quasi-steady expansion into the tube once the initial wave system clears the hole and before any of those waves return.
As I stated before, the shock generated by the burst will accelerate the air in the tube to exactly the same velocity as the bolt of air coming into the tube from the atmosphere. There will still be a so-called contact surface between those two air masses across which velocity and pressure are constant but temperature is not.
Below is some figures illustrating the conditions in the simple shock tube approximation I used before (description below figure):
So basically, to describe that process, the two gases are initially at 300 K and separated by a diaphragm (the tube wall in the case of hyperloop) as shown in the top figure. The diaphragm bursts causing a shock (red) to propagate into the tube and an expansion wave (blue) to set up in order to accelerate air into the tube (second figure). A contact surface forms (gray) and travels downstream slower than the shock. Across the contact surface, pressure and velocity (figures 3 and 5) are constant but temperature (figure 4) varies due to the different reservoir condition and acceleration method from which each region was derived. That temperature interface will blur over time as diffusion (i.e. conduction in this case) occurs, but we are ignoring that effect here.