Portion of Chromosome Copied with Limited dTTP

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SUMMARY

The discussion focuses on estimating the fraction of a diploid set of chromosomes that can be copied when dTTP synthesis is blocked, starting with an initial concentration of 1 mM. Key calculations involve the average chromosome size of 150 million base pairs and the molar weight of dTTP at 482.168 g/mol. The challenge lies in converting the concentration of dTTP into usable moles for DNA synthesis, considering the volume of a typical cell, estimated at 1 cubic micrometer. Participants emphasize the need for further understanding of the relationship between dTTP concentration and chromosome replication.

PREREQUISITES
  • Understanding of DNA synthesis and the role of dTTP
  • Basic knowledge of molar weight calculations
  • Familiarity with cell size and volume estimations
  • Concept of diploid chromosome sets
NEXT STEPS
  • Research the role of dTTP in DNA replication mechanisms
  • Learn about molarity and its application in biological systems
  • Explore methods for estimating cellular volumes in molecular biology
  • Investigate the implications of nucleotide availability on genetic replication
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Students studying molecular biology, particularly those interested in DNA replication processes, biochemists analyzing nucleotide concentrations, and educators seeking to explain the complexities of chromosome copying under limited resource conditions.

whamola411
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1. dTTP is used in DNA synthesis. dTTP concentrations are mM, while a particular chromosome has only two copies. Estimate what fraction of the complete diploid set of chromosomes will be copied if at the start of DNA synthesis all new production of dTTP is blocked and the initial concentration of dTTp is 1 mM.
Several estimates need to be made. Explain where the estimates come from.




2. I don't have any relevant equations. This problem has no correlation to what we are learning in class, other than we are just starting to learn about DNA.



3. I started by finding out how big an average chromosome is and got 150*10^6 bp of 3*10^8 bases. Then I found the molar weight of dTTP to be 482.168 g/mol. I also found online that an average nucleotide weighs about 330 g/mol. Then I divided the total number of nucleotides by the MW for one nucleotide: 3*10^8/330 = 9.09*10^5 g/mol of nucleotides in one chromosome pair.

From here I don't know where to go because of the mM. The fact that there is a liter in the units throws me off completely.

 
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First, you need to estimate the size of the cell in order to figure out how many moles of dTTP are in the cell.
 
Well, a typical cell is around 1 micrometer, or .001 mm. So, if we need volume, I would assume a cell to be roughly square and the volume to be .001*.001*.001 = 1*10^-9 mm^3
 

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