The OP question doesn't make a lot of sense to me - turboprops and turbofans as opposed to what? And a turbofan isn't generally considered a propeller - on a propeller plane (whether turboprop or piston), the propeller generates all of the thrust, whereas on a turbofan, the fan is only part of the thrust.
Did you mean turboprops instead of turbofans? If so, I'd generally say that most modern cargo aircraft are turbofan, not turboprop. If that is what you are asking, speed and altitude requirements are a critical difference between the two. The C-130, for example, is still around today largely for its spectacular low-speed performance. It was STOL before the term was coined. Essentially, if you decide you don't need to fly faster than, say, 350kts, then you can go with straight, fat wings, for high efficiency at low speed.
And propellers "grab" more air at low speed than jets, which is part of the reason for the invention of the turbofan. I never got to a propulsion class, but iirc, the fact that propellers are variable pitch means their power output is relatively constant with airspeed whereas jets are less efficient at low airspeed.
Besides cargo, the C-130 and the P-3 Orion (Locheed Constellation) are used a lot as Patrol aircraft because for that kind of aircraft, gallons of fuel per hour is a much more important measure of efficiency than gallons per mile.