CHEF Gel Troubleshooting: Help With Plugs & Ladder

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SUMMARY

The discussion focuses on troubleshooting issues with CHEF gel electrophoresis, specifically regarding plugs not leaving the wells and the presence of a thick band in the well as indicated by ethidium bromide staining. Participants emphasize the importance of ruling out power supply issues, recommending the use of a voltmeter for standard power supplies or an oscilloscope for pulsed potential supplies. The troubleshooting process is critical for successful gel electrophoresis outcomes.

PREREQUISITES
  • Understanding of CHEF gel electrophoresis techniques
  • Knowledge of ethidium bromide staining methods
  • Familiarity with voltmeters and oscilloscopes
  • Basic electrical troubleshooting skills
NEXT STEPS
  • Research troubleshooting techniques for CHEF gel electrophoresis
  • Learn about the use of oscilloscopes in electrophoresis applications
  • Explore best practices for ethidium bromide staining
  • Investigate common power supply issues in gel electrophoresis
USEFUL FOR

Researchers, laboratory technicians, and students involved in molecular biology and electrophoresis who are seeking to optimize their CHEF gel experiments and troubleshoot common issues effectively.

MatthewHaas
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Has anyone ever ran a CHEF gel before? I am having trouble getting my plugs to leave the wells. Ethidium bromide staining shows a thick band in the well, and I am supposed to have a ladder. I have some images I can post, but I figured it makes more sense to first see if anyone out there has any expertise in the area.

Thanks!
 
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Did anything get out of the well? I assume that you have already ruled out power supply issues, yes?
 
I am sorry for the late reply. No, nothing got out of the well. We have not rulerd out power supply issues.
 
Power supply is the first thing you check. Use a voltmeter unless the power supply applies a pulsed potential. If it is pulsed, you need an oscilliscope.
 

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