High-frequency noise in an SMPS transformer can arise from several issues, including instability in the feedback loop, improper transformer design, or unsuitable components for high current applications. Observing the pulse waveform driving the MOSFET can reveal variations in pulse width, indicating oscillation and a potential stability problem. If the transformer ratio is incorrect, it may cause sub-harmonic instability, particularly in flyback supplies. Operating the supply in discontinuous mode or resizing the transformer can help mitigate these issues. Consulting an experienced electronic engineer and ensuring proper component selection and shielding are crucial for resolving the noise problem.