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I've got a problem with following problem. I have build my first algorithm for Metropolis Monte Carlo. Now I am in a testing phase and one of my bosses ask me for autocorrelation function of my system. I find something in literature, but I am not sure exactly what the autocorrelation function is in my case. I simulate polymer chain inside tube, and I know that due to Metropolis algoritm the new and old conformation are similar but I am can't understand how to implement and how to estimate autocorrelation function for my system.

Please, does anybody know how to around this?

Thank you in advance

PN