India or anywhere else is NOT moving relative to the atmosphere.
The Earth's atmosphere rotates along with the Earth's surface, at the same speed, more or or less.
Small local differences are what we call 'wind'.
A plane in the atmosphere is therefore also rotating along with the the rotation of the planet,
and in addition to that the plane also has a given air speed and direction.
A plane flying at 1000kph either east or west or in any direction will travel 1000km in one hour RELATIVE TO THE EARTH'S SURFACE.
We don't calculate the speed of the plane relatively to some fixed point in space outside of the Earth because that has no practical value whatever.