I don't think it would be that hard to come up with a QM theory of gravity waves at the weak limit. The problem with mixing QM and gravity is that GR is very non-linear so that when you use linear perturbation theory then the math gets very, very, very messy, and you don't come up with any usable answers.
If you have a situation in which the gravity waves were weak, then I think it wouldn't be difficult to come up with a way of quantizing gravity waves. The trouble is that it's not interesting theoretically, and it's also not interesting experimentally, because what you'll find is that the you wouldn't really be able to detect any quantum effects.