Ahhh! Thats what I thought you meant. You are definitely talking about individual amino acids.
When you adjust the pH, you will either pull off a proton (pH up) from the ammonium ion portion or donate one (pH down) to the carboxylate. Yes, this would affect ionic bonding. Since the ionic bond isn't really very strong, an increase in temperature can also overcome this bonding. Of course, I am talking about ionic bonds between separate molecules of amino acids.
If the question is referring to peptides (or proteins) and is asking how one would break the bonds between individual amino acids within the peptide or protein, hydrolysis seems most appropriate.
Exactly as Spirochete and CrawfordK have indicated.
Thanks for the congrats! I'm still getting used to the idea of being nominated and especially the medal. After seeing the efforts of the other winners (past and present), I feel a bit unworthy.