Dissertation guidance -- Non-linear Diff. Eqs and Photosynthesis

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Discussion Overview

The discussion revolves around the research of light energy absorption by leaves and its subsequent use in photosynthesis, specifically focusing on the application of nonlinear ordinary differential equations to model this process. Participants explore how to structure a dissertation that connects the title with the model from existing literature.

Discussion Character

  • Exploratory
  • Technical explanation
  • Homework-related

Main Points Raised

  • One participant is researching the dynamics of light energy flow in photosystem II and seeks guidance on structuring their dissertation, which involves a system of three nonlinear ordinary differential equations.
  • The same participant references a specific model from a paper on light use in photosystem II and expresses uncertainty about linking the dissertation title with the model.
  • Another participant suggests looking for similar papers and consulting with a professor for advice, highlighting arxiv.org as a resource for scientific papers.
  • A later reply provides a reference to a specific paper related to the model being studied, indicating a potential source of information.
  • One participant corrects a previous link to arxiv.org, providing a more specific URL for accessing relevant biological modeling papers.

Areas of Agreement / Disagreement

Participants generally agree on the need for additional resources and guidance, but there is no consensus on specific methodologies or solutions for the dissertation structure. The discussion remains unresolved regarding how to effectively link the dissertation title with the model.

Contextual Notes

Participants have not fully explored the assumptions underlying the nonlinear ordinary differential equations or the specific dynamics of light energy flow in photosystem II. There may be limitations in the references provided and the applicability of the suggested papers to the participant's specific research question.

wel
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Hi everyone.
I am doing research about what happens to light energy after it has been absorbed by a leaf but before it has been used in the photosysnthetic reactions. For that I need to use system of 3 nonlinear ordinary differential equations.

My dissertation title is : A hybrid numerical scheme for a system of nonlinear ordinary differential equations.
A Model from the paper: A simple model of light use in Photosystem II
Background of model: Dynamic flow of light energy through photosystem II under light changing condtions.This is my first time writing dissertation, so i am having problem how to structure my project because some how i have to link up dissertation title and model of paper together properly. how can i use system of nonlinear ordinary differential equations in simple model of light use in Photosystem II? it can be either with numerical results or analytic solutions.

Has someone done this kind of research before? any good reference/books will be useful for me.
 
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Have you looked for similar papers or asked your prof for some advice?

The arxiv.org is a good place to find scientific papers. There is a section on Qualitative Biology where people talk about modeling various kinds of biological systems:

http://www.mnh.si.edu/vtp/1-desktop/
 
I can not find any scientific papers from your link. A paper is from thins model: simple model of light use in Photosystem II.

Reference: A. Porcar-Castell, J. Back, E. Juurola, and P. Hari. Dynamics of the energy flow through photosystem ii under changing light conditions: a model approach. Functional Plant Biol-
ogy, 33(3) : pp229 pp239; 2006.
 

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