Well yes, as a pedagogical approach we have to be careful. But I come from the other side of "being careful". If we imagine a spectrum with skepticism on one side and innovation on the other, our goal is to be the "moderate" in the middle. Of course, none of us can really be in the middle, and if we were really homogonized like that, we probably wouldn't get very far in science.
It's the social feedback network (to speak of feedback again) between peoples a little perturbed to either side of the middle that pushes science forward.
But I feel sometimes that the skepticism-leaning side is over-represented. And not just trivially. I think sometimes students that could have become inspired and innovated science are discouraged by emotionally intense words like "crackpot" (a word I think is flung around too loosely around here).
There's really no pedagogical reason to call things "crackpot". It's an emotionally-charged word that has little substance (whatever you mean by it, you can specifically say instead). I don't see it in peer-review papers, I don't hear high-quality lecturers use the word in classes unless they're specifically outlining a social behavior of scientists, (i.e. if you have watched Sapolsky's lectures I posted on Human Behavioral Biology, he describes two subcultures of scientist and how they practice such harsh skepticism of each other).
yet it seems to have slipped through the cracks as permissible ad-hominem on physicsforums. I don't mean to imply that you intended that way, but never-the-less, for all the ad-hominem attacks people are restricted from using, they find ways to focus them into permissible actions, especially when mentors happily oblige the behavior (benevolently or not).
If we can inspire people to become scientists in the first place, even if they have facts or philosophies that sound "crackpot", the overwhelming power of the "way of thinking" will eventually overcome those "crackpot" facts and philosophies... or, by chance, they'll turn out to be right.
Anyway, this is a long-due rant I've pent up over time. But I am bias; I think all teachers (and outreach administrators) should be required to learn about the psychology of learning and learning styles in general because once you really learn science, you have a different way of seeing things and you forget how it was to see the world before, and then by the time you're emiritis, neuroplasticity is so reduced that you haven't realized what's changed in science over the last 30 years. [/rant]