Harvard Team Discovers 'Hemolithin' Protein Series on Asteroid

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Discussion Overview

The discussion revolves around the discovery of a protein series termed "Hemolithin" by a Harvard team, purportedly found in an asteroid. Participants explore the implications of this finding for astrobiology, the nature of the molecules involved, and their potential origins, including abiotic processes. The conversation touches on definitions of proteins versus peptides and the broader implications for the understanding of life's origins.

Discussion Character

  • Exploratory
  • Debate/contested
  • Technical explanation
  • Conceptual clarification

Main Points Raised

  • Some participants question the classification of Hemolithin as proteins due to their short chain lengths, suggesting they may be better described as peptides or polypeptides.
  • Others argue that if the findings are accurate, they could provide significant evidence for abiotic polypeptide formation, influencing theories on the origin of life.
  • A participant references a category of short amino acid sequences known as miniproteins, which are biologically active, suggesting that such sequences could arise in the evolution of more complex proteins.
  • Concerns are raised about the presence of lithium in the Hemolithin findings, with some participants noting its low abundance in the universe.
  • There is a discussion about the limitations of considering these molecules as products of biological processes, emphasizing that no replication mechanism has been established for these sequences.
  • Some participants express uncertainty regarding the implications of the findings for understanding protein synthesis and abiogenesis.

Areas of Agreement / Disagreement

Participants generally express disagreement on the classification of Hemolithin and its implications for biological processes. There is no consensus on whether these molecules should be considered proteins or peptides, and the discussion remains unresolved regarding their origins and significance.

Contextual Notes

Participants highlight the need for caution in interpreting the findings, particularly regarding the biological implications of the term "protein" and the potential for artifacts in the research. The discussion also reflects uncertainty about the evolutionary context of these short sequences.

.Scott
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TL;DR
Harvard researchers believe they have found protein inside a 1989 meteorite.
A Harvard teams believe they have found a protein series they call "Hemolithin" in an asteroid.
Isotopes and other evidence indicates that it is not from a terrestrial source."Astrobiology Web" link
arxiv pdf link

Structures are presented in S5 for each of these. 2320 and 2364 have 32 amino acid residues while 2124 has 30. An additional 34 amino acid structure at 2402 is also proposed in S5, to fit two peaks within the 4641Da cluster. The chain lengths in each anti-parallel configuration are therefore 16 residues for 2320 and 2364, 15 residues for 2124 and 17 residues for 2402. As discussed herein the glycine residues are subject to varying degrees of hydroxylation, but the more constant parameter is the number of glycines per side. We propose calling the 16-residue entity Hemolithin 16, and the 15 or 17-residue entities Hemolithins 15 or 17.
 
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It is somewhat of a stretch to call these proteins. Proteins are typically much longer polypeptide chains. For example, the Wikipedia entry for proteins says "Short polypeptides, containing less than 20–30 residues, are rarely considered to be proteins and are commonly called peptides, or sometimes oligopeptides."

Still, this is an interesting finding that, if true, could provide pretty strong evidence for abiotic polypeptide formation and influence how we thing about the potential origin of life on Earth.
 
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@Ygggdrasil

FWIW -
In this thread
https://www.physicsforums.com/threads/science-white-paper-on-miniproteins.979258/

There is a category of short and redundant amino acids sequences called miniproteins that are biologically active.
White paper:
https://www.sciencemag.org/news/2019/10/new-universe-miniproteins-upending-cell-biology-and-genetics

Assuming the hemolithin paper is not the result of an artifact, short sequences like this would reasonably be expected to arise in the course of the evolution of more complex proteins. I am not so sure about the presence of the Lithium atom in the results. The mass fraction of Lithium is way down the list of elements ordered by abundance in the Universe, ditto the Solar System.
 
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jim mcnamara said:
Assuming the hemolithin paper is not the result of an artifact, short sequences like this would reasonably be expected to arise in the course of the evolution of more complex proteins.
The "evolution of more complex proteins" suggests a Darwinian selection process. Just to be clear, no one is suggesting that this particular protein, or mini-protein, or polypeptide was the result of DNA, RNA, or any other kind of replication process. So it's potential to "evolve" is really limited.
 
What I tried to say, not very well obviously, is that protein abiogenesis (synthesis) had to start small.

Miniproteins are the 'leftovers' of that early synthetic step. Procaryotes and Eukaryotes still employ them for other uses. I'm citing the minprotein paper as much as anything. And using the homeolithin molecule as supportive for what the miniprotein paper claims. In a loose sense they are a "fit". By no means anything conclusive.

I try for perspective, or insight, pick a name... because most PF'ers are not Biologists. It backfires sometimes. Sorry.
 
jim mcnamara said:
@Ygggdrasil

FWIW -
In this thread
https://www.physicsforums.com/threads/science-white-paper-on-miniproteins.979258/

There is a category of short and redundant amino acids sequences called miniproteins that are biologically active.
White paper:
https://www.sciencemag.org/news/2019/10/new-universe-miniproteins-upending-cell-biology-and-genetics

Assuming the hemolithin paper is not the result of an artifact, short sequences like this would reasonably be expected to arise in the course of the evolution of more complex proteins. I am not so sure about the presence of the Lithium atom in the results. The mass fraction of Lithium is way down the list of elements ordered by abundance in the Universe, ditto the Solar System.

I guess I have two problems with the authors' characterization of the peptides as proteins:
1) The term protein implies that it is a molecule of biological origin, which has not yet been shown.
2) As you mention above, the term protein also implies some biological activity or function, which also has not yet been established.

Calling the molecules peptides or polypeptides would not carry these biological implications and, in my opinion, would be a better label for their findings.
 
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