Are There Exceptions to Transcription Factors Binding to Specific DNA Sequences?

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SUMMARY

The discussion centers on the specificity of transcription factors (TFs) in binding to DNA sequences, specifically addressing whether a TF can bind to multiple sequences. It is established that transcription factors are defined by their sequence-specific binding capabilities, as exemplified by MITF, which binds to a single DNA sequence across different enhancers. While most TFs recognize specific sequences, exceptions exist, such as TFs with multiple DNA-binding domains that can interact with different sequences. The conversation highlights the distinction between transcription factors and other regulatory proteins that do not bind DNA in a sequence-specific manner.

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  • Understanding of transcription factors and their role in gene regulation.
  • Familiarity with DNA-binding domains and their specificity.
  • Knowledge of chromatin remodeling proteins and their functions.
  • Awareness of histone modifications and their impact on DNA accessibility.
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  • Research the structure and function of MITF and its binding mechanisms.
  • Explore the concept of transcription factors with multiple DNA-binding domains.
  • Investigate the role of chromatin remodeling proteins in gene expression.
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Researchers in molecular biology, geneticists, and anyone studying gene regulation and transcription factor dynamics will benefit from this discussion.

MrGenetic
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Can be possible the transcription factor's dna binding domain's binding to two or more different DNA sequence in different(or also same) enhancers? Or there is no exception, it must be specific for dna sequence like CAATTAGTCA...
for example my book says; ''MITF's binding domain can attach just the one dna sequence in the different specific enhancers regions. Is there any different possibility?
 
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Part of the answer is tautological: transcription factors are defined as proteins that bind to DNA in a sequence-specific manner. Therefore, if a protein does not bind to a specific DNA sequence, it will not be classified as a transcription factor. There are plenty of transcriptional regulators that do not bind specific DNA sequences (e.g. chromatin remodeling proteins, RNA polymerase and many of its associated factors, the polycomb repressive complexes, etc), and some are recruited to DNA by features of the than DNA sequence (e.g. histone modifications).

For most sequence-specific DNA binding proteins, I think most will recognize only a certain DNA sequence. I found an example of a transcription factor that can recognize two distinct DNA sequences, but this is because the TF has two distinct DNA-binding domains (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1171765/).
 

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