Peptide chains with ER sequences

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SUMMARY

This discussion focuses on the analysis of peptide chains with endoplasmic reticulum (ER) signal sequences. Participants are tasked with determining the orientation of peptide chains based on the presence and location of ER signal peptides and stop transfer signals. Key questions include identifying the presence of ER signal peptides, their location (N-terminus or C-terminus), and the implications for transmembrane domain integration. Figures from the National Center for Biotechnology Information (NCBI) are referenced to illustrate these concepts and aid in understanding protein positioning relative to the ER.

PREREQUISITES
  • Understanding of peptide chain structure and terminology
  • Knowledge of endoplasmic reticulum (ER) function in protein synthesis
  • Familiarity with signal peptides and stop transfer sequences
  • Ability to interpret biological figures and diagrams
NEXT STEPS
  • Study the mechanism of ER signal peptide recognition in protein targeting
  • Learn about transmembrane domain integration in membrane proteins
  • Explore the role of stop transfer sequences in protein membrane insertion
  • Review cell biology literature on the endoplasmic reticulum and protein processing
USEFUL FOR

Cell biologists, molecular biologists, and students studying protein synthesis and membrane biology will benefit from this discussion, particularly those interested in the mechanisms of protein targeting and integration within the endoplasmic reticulum.

lexia925
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I have been given 5 peptide chains with ER sequencs. I am supposed to draw the chain as it would be associated with the ER. But I don't understand by looking at one with just an N-terminal and Er signal how it should be positioned. How can you tell just by the presence (or absence of) an ER signal and stop transfer which end the N-terminal is and which is the C- terminal? :confused:
 
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Could you please expand on the ER - what is ER?
 
What we're supposed to do is figure out how to draw the protien on either side of the ER depending on if there is an ER signal or a stop transfer signal on it. Thats where i get lost.
 
Look carefully at this picture

http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2224

there a signal peptide and a stop signal - What happen to the peptide?

Look a these two figures now
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2225
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2212

Different location of the signal peptide results in different events.

Also compare these figures
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2225
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2224
http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=mboc4.figgrp.2227

Same kind of results but there two differences - Can you spot the differences?

Just to summarize question you need to ask when analyzing your peptide and the figures:
1. Is a ER signal peptide present?
2. If so, where is the signal peptide located (N-terminus, COOH-terminus or inside the peptide)?
3. If so, how many ER signa are present? Tell you how many transmembrane domain will be integrate in the membrane.
4. Is a stop transfer signal sequence present? Tell you if the protein will be integrated in the membrane
5. If so, how many stop transfer signal sequence and where the signal sequence located?
 

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