SBML to create non linear models

  • Thread starter Thread starter ptabor
  • Start date Start date
  • Tags Tags
    Linear Models
Click For Summary
SUMMARY

The discussion focuses on the use of SBML (Systems Biology Markup Language) for creating non-linear models. The user mentions using JDesigner, which is limited to basic reaction types, and highlights MesoRD as a more suitable tool for solving reaction-diffusion equations in both linear and non-linear contexts. MesoRD is noted for its ease of modification, making it a valuable resource for users needing to work with complex models.

PREREQUISITES
  • Familiarity with SBML (Systems Biology Markup Language)
  • Understanding of non-linear modeling techniques
  • Experience with reaction-diffusion equations
  • Knowledge of the MesoRD program for modeling
NEXT STEPS
  • Explore advanced features of MesoRD for non-linear modeling
  • Learn about reaction-diffusion equations and their applications
  • Investigate other visual editors compatible with SBML
  • Study the modifications possible within MesoRD for custom modeling
USEFUL FOR

Researchers, biologists, and computational modelers interested in creating and modifying non-linear models using SBML and MesoRD.

ptabor
Messages
14
Reaction score
0
Not sure if this is suited for this forum or for programming... I figured more people here would have experience with SBML.

Does anyone know of a good visual editor to create non linear models?

I'm using Jdesigner but that only has gui support for garden variety uni-uni, uni-bi, etc. reactions.
 
Biology news on Phys.org
In SBML family has the MesoRD program. This program used to solve reaction diffusion eq. in linear and non-linear equations(deterministic and Stochastic problem). This program simple to modify...

http://pkbiophys.blogspot.com/
 

Similar threads

Epothilone B study connected to 'Hard Problem of Consciousness' Model
  • · Replies 9 ·
Replies
9
Views
4K
Admissions Need advice for Low GPA / Good Research / HEPth PhD application
  • · Replies 26 ·
Replies
26
Views
7K
Cool Optical Illusion and Our Created Reality
  • · Replies 3 ·
Replies
3
Views
3K
Undergrad Matrix Mechanics and non-linear least squares analogy?
  • · Replies 30 ·
2
Replies
30
Views
3K
Admissions Can additional research make up for a low GPA in graduate school admissions?
  • · Replies 3 ·
Replies
3
Views
3K
Modelling non linear springs in abaqus
  • · Replies 1 ·
Replies
1
Views
13K
Job Skills Overwhelmed by Choices: Seeking Advice on Staying Engaged with Project
  • · Replies 21 ·
Replies
21
Views
3K
Forex trading from engineer with good background in maths-NN
  • · Replies 26 ·
Replies
26
Views
4K
I could really use some help picking my optional module [GameDev]
  • · Replies 2 ·
Replies
2
Views
3K
Heat transfer in wing by anti-ice system using hot air in piccolo tube
  • · Replies 6 ·
Replies
6
Views
3K