Allosteric activity in enzymes.

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SUMMARY

The discussion centers on allosteric activity in enzymes, specifically how enzymes differentiate between substrate concentrations to initiate allosteric effects. It highlights the role of the dissociation constant (Kd) in determining the binding of allosteric effectors to enzymes. The mathematical relationship f = [I]/(Kd + [I]) illustrates how varying concentrations of effectors influence enzyme activity. Enzymes have evolved to maintain Kd values close to physiological concentrations, resulting in distinct populations of enzymes operating at different rates based on effector binding.

PREREQUISITES
  • Understanding of enzyme kinetics and allosteric regulation
  • Familiarity with the dissociation constant (Kd) and its significance
  • Basic knowledge of chemical bonding and collision theory
  • Mathematical skills to interpret enzyme activity equations
NEXT STEPS
  • Research the role of allosteric effectors in enzyme regulation
  • Study enzyme kinetics, focusing on Michaelis-Menten and allosteric models
  • Explore the physiological implications of Kd in metabolic pathways
  • Examine case studies of enzymes with known allosteric properties
USEFUL FOR

Biochemists, molecular biologists, and students studying enzyme function and regulation will benefit from this discussion, particularly those interested in the mechanisms of allosteric modulation in metabolic processes.

shredder666
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I've always wondered how enzymes could tell the difference between too much substrate and too little substrate to initiate allosteric activities, my teacher tells me that its kinda like collision theory in chemical bonding. That would make sense because if there's too much product, then some of it has got to bind with the allosteric site in the last enzyme. But then what if there's like 1 product in 100 gizzilion substrates that gets binded into the allosteric site? Does that mean even in "normal" enzyme activity, some enzymes are in the "work faster" mode and some enzymes are in the "work at normal rate" mode?
 
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Binding between an enzyme and an allosteric effector (or any other molecule that binds to the enzyme) is governed by the dissociation constant for the interaction (Kd, which has units of concentration). Mathematically:

f = \frac{<i>}{K_d + <i>}</i></i>

where f is the fraction of enzymes bound by the effector and is the concentration of free effector in solution. When the concentration of effector is much larger than the dissociation constant, nearly all of the enzymes are bound to an effector molecule. When the concentration of effector is much smaller than the dissociation constant, only a very small fraction of the enzyme is bound by the effector.

In most cases, the enzyme has evolved so that it's Kd for its allosteric effectors is near the physiological concentrations of these acceptors. In this case, as you correctly state, there is some amount of enzyme that is bound by the effector and some amount that is unbound. Therefore, there are two populations of enzymes that work at different rates. The overall rate of the reaction, however, is governed by the amount of enzyme in the relative proportion of enzyme in the high-activity state versus the low activity state.
 

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