An equivalence relation on a set X is defined by three properties: reflexivity, symmetry, and transitivity. Equivalence classes, which group elements related by the equivalence relation, are subsets of X, not X × X. The union of all equivalence classes indeed partitions the set X, meaning every element belongs to exactly one class. The confusion arises from misunderstanding the relationship between equivalence classes and Cartesian products. Ultimately, the equivalence classes do not form a partition of X × X, but rather partition the original set X.