Ok, I'm almost sure it's about wrong gear ratio, and it could be due to aerodynamic drag.
You have doubled the radius of the load application point, and the motor has responded by falling from 600 rpm to 250.
But, if you calculate the tip speeds in two cases, you obtain:
with rpm=600 and r=15" : V=79 ft/s
with rpm=250 and r=30" : V=66 ft/s
Not very dissimilar values.
If the geometric form of the molds are similar, you basically have almost the same aerodynamic drag force but you have doubled the torque, because the application point of the force has passed form 15" to 30".
But I think that the torque now is even bigger than that, because a beam + 2 molds at the ends doesn't sound nice from the aerodynamic point of view. :D
And if you didn't balance that stuff dynamically, it will even generate en extra torque due to higher friction at the bearings.
So, you have more than a double torque in the motor's low RPM zone, and that's overheating.
Now, this is a simplification because I'm writing it without having seen the centrifuge, so take it as a guess. If you have a pic of it, this is the time to show it. ;)