Electric potential at the surface of a protien

Click For Summary
SUMMARY

The discussion focuses on calculating the electric potential at the surface of a protein sphere with a radius of 18Å and a charge of Q = -10e in a 0.05M NaCl solution at 25 ˚C. The surface potential is derived using the Poisson-Boltzmann equation, specifically the formula V(R) = [1/(4π(epsilon naught)D)]*[Q/R]*[(lambda sub D)/(R+lambda sub D)], where lambda sub D represents the Debye screening length. Additionally, the concentration of Na+ and Cl- ions at the protein's surface and at 3 Å from the surface is determined using c+ = ce^(-qV(r)/kT) and c- = ce^(qV(r)/kT). The discussion emphasizes the significance of these calculations in understanding protein behavior in cellular environments.

PREREQUISITES
  • Understanding of the Poisson-Boltzmann equation
  • Familiarity with Debye screening length calculations
  • Knowledge of ionic concentrations in solutions
  • Basic principles of electrostatics in biophysics
NEXT STEPS
  • Calculate the Debye screening length for various ionic strengths
  • Explore the implications of surface potential on protein folding
  • Investigate the effects of ionic valency on electric potential
  • Review literature on molten globules and their role in cellular biophysics
USEFUL FOR

Biophysicists, molecular biologists, and researchers studying protein interactions in ionic solutions will benefit from this discussion, particularly those interested in the electrostatic properties of proteins in cellular environments.

Oijl
Messages
102
Reaction score
0

Homework Statement


Consider a protein sphere with a radius of 18Å, and charge Q = -10e, in an aqueous solution of c = 0.05M NaCl at 25 ˚C. We consider the small ions as point charges and use the linear approximation to the Poisson-Boltzmann equation.

What is the surface potential of the protein in units kT/e?

ALSO

What is the concentration of Na+ ions and of Cl- ions at the surface and at 3 Å from the surface of the protein?

Homework Equations


An expression for the potential at the surface of a charged sphere (in a salty solution):

V(R) = [1/(4π(epsilon naught)D)]*[Q/R]*[(lambda sub D)/(R+lambda sub D)]

And

lambda sub D = square root of [(D(espsilon naught)kT)/(2(z^2)(e^2)c)]

where lambda sub D is the Debye screening length.ALSO, for the second question,

c+ = ce^(-qV(r)/kT)
c- = ce^(qV(r)/kT)

where q is the charge of the ion.

The Attempt at a Solution



How can I solve for V in terms of kT/e? I'd like to go on with my question, but I have to leave now, so I'll put up this so far, which is my basic question. Thanks.

EDIT:

Attempting the second question, I still need to be able to obtain a numerical value for V, for which I need to be able to evaluate the Debye screening length. I don't know what z is in that, so I can't get a number. What is z? The valency? If so, it's the valency of the ions in the solution, right? So, here, the valency of... Na? Cl?
 
Last edited:
Physics news on Phys.org
Dear Oijl,

The task ("Electric potential at the surface of a protien") you are trying to solve is very important for the physiology and biophysics of the living cell. Literature gives molten globules very important role in the cell, however, in order to melt globule need harsh physical conditions. In my last article ("Native aggregation..."), I suggest that such harsh conditions can occur in microvolumes (several protein molecules) of cytoplasm. Your idea of the potential on the surface of the protein may be important to understand the sources of energy needed to melt globules. Perhaps we could write a joint paper. :)
You can download my article from my web-site: http://vladimirmatveev.ru
In any case, it would be interesting to know your opinion.
 
Last edited:

Similar threads

  • · Replies 11 ·
Replies
11
Views
1K
Replies
5
Views
595
  • · Replies 16 ·
Replies
16
Views
1K
Replies
8
Views
2K
Replies
1
Views
2K
  • · Replies 23 ·
Replies
23
Views
2K
Replies
64
Views
5K
  • · Replies 11 ·
Replies
11
Views
3K
Replies
3
Views
1K