Probability of the polymer chain

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SUMMARY

The discussion focuses on the configurations of a polymer chain with N links of length l, exploring the relationship between the number of configurations and the total length x. Participants clarify that for a specified x, the configurations are not infinite, especially in one dimension. The conversation also delves into the implications of folding the polymer and how this affects the total number of configurations. Key equations discussed include the entropy formula S=-k and the expression for configurations involving factorials.

PREREQUISITES
  • Understanding of polymer physics and chain configurations
  • Familiarity with combinatorial mathematics, specifically factorials
  • Knowledge of statistical mechanics, particularly entropy calculations
  • Basic grasp of dimensional analysis in physical equations
NEXT STEPS
  • Study the implications of Stirling's approximation for factorials in statistical mechanics
  • Research polymer chain dynamics and configurations in one-dimensional systems
  • Explore entropy calculations in thermodynamic systems
  • Investigate the relationship between polymer folding and configurational entropy
USEFUL FOR

Students and researchers in polymer physics, statisticians working with combinatorial problems, and anyone interested in the thermodynamic properties of polymer chains.

Kelly Lin
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Homework Statement


g8J8LED.png

Homework Equations


I want to check if I think it right!

The Attempt at a Solution


If
N=1: ← or → (2 configurations/ each length is l)
N=2: ← or → or ←← or ←→ or →← or →→
------→----←
(6 configurations/ folded polymer's length is l/2 andunfolded polymer's length is l)
Thus, the configuration written in the function of x:
<br /> 2^{N} \hspace{1cm}\text{ for } x=l \\ <br /> (l/x)! \hspace{1cm}\textrm{ otherwise}<br /> <br />
 
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If N is the number of links of length l in the chain and x is the total length in a given configuration, how many links are in one direction and how many are in the other direction? How many ways are there are selecting the combinations of links that do this? (This is like a coin flipping problem).
 
Chestermiller said:
If N is the number of links of length l in the chain and x is the total length in a given configuration, how many links are in one direction and how many are in the other direction? How many ways are there are selecting the combinations of links that do this? (This is like a coin flipping problem).
oh!So the length l doesn't mean the total length?
 
Kelly Lin said:
oh!So the length l doesn't mean the total length?
NO, it's the length of each link.
 
Chestermiller said:
NO, it's the length of each link.
Thanks! Reading mistake!
 
Chestermiller said:
If N is the number of links of length l in the chain and x is the total length in a given configuration, how many links are in one direction and how many are in the other direction? How many ways are there are selecting the combinations of links that do this? (This is like a coin flipping problem).
Actually, I have another question. How come the second question asks about the total number of configurations? In my opinion, there are infinite configurations depend on unlimited x. Does the question ask about the average configuration number?
Thanks!
 
Kelly Lin said:
Actually, I have another question. How come the second question asks about the total number of configurations? In my opinion, there are infinite configurations depend on unlimited x. Does the question ask about the average configuration number?
Thanks!
For a specified x, there are not an infinite number of configurations (at least not in 1D).
 
Chestermiller said:
For a specified x, there are not an infinite number of configurations (at least not in 1D).
But, I think the first question asks the total number of specific x. Or, can the polymer be folded? This really make the answers of two questions different.
 
Kelly Lin said:
But, I think the first question asks the total number of specific x. Or, can the polymer be folded? This really make the answers of two questions different.
It seems to me the implication is that it is folded along a straight line.
 
  • #10
ePPARcB.png


Is it what the question means?
Chestermiller said:
It seems to me the implication is that it is folded along a straight line.
 
  • #11
I don't think so. You need to figure out for a chain of identical joined links that can be folded along the x axis. So, for x = L, and N= 2, there are zero configurations. Leave off the arrows. For x = 2L and N = 2, there is only one configuration. For x = L and N = 1, there is only one configuration.
 
  • #12
Chestermiller said:
It seems to me the implication is that it is folded along a straight line.
Chestermiller said:
I don't think so. You need to figure out for a chain of identical joined links that can be folded along the x axis. So, for x = L, and N= 2, there are zero configurations. Leave off the arrows. For x = 2L and N = 2, there is only one configuration. For x = L and N = 1, there is only one configuration.
But the question mentions that each segment can be orientated in positive or negative directions. Don't we consider the direction (arrow) in different cases?
 
  • #13
Also, why can't N=2 chain be folded? Thanks!
 
  • #14
Kelly Lin said:
But the question mentions that each segment can be orientated in positive or negative directions. Don't we consider the direction (arrow) in different cases?
No. It's just if there is a fold or not at each jumction. The focus should be in the junctions, not the links.
 
  • #15
Kelly Lin said:
Also, why can't N=2 chain be folded? Thanks!
Yes If N=2, you can have x=1 with a fold.
 
  • #16
Chestermiller said:
Yes If N=2, you can have x=1 with a fold.
So you mean if N=2 there are 3 configurations?
4UDWnUg.png
 

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  • #17
Kelly Lin said:
So you mean if N=2 there are 3 configurations?
View attachment 208439
If N is 2 and x is 2, then there is 1 configuration. If N is 2 and x is 1, I would have to decide whether there are 2 configurations or 1. My inclination would be to count it as 1 configuration.
 
  • #18
Chestermiller said:
If N is 2 and x is 2, then there is 1 configuration. If N is 2 and x is 1, I would have to decide whether there are 2 configurations or 1. My inclination would be to count it as 1 configuration.
gLVkmEr.png

I think this is more viable!
 

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  • #19
For the entropy in the system,
since
<br /> S=-k&lt;lnP_{r}&gt;=-k\sum_{r}{P_{r}lnP_{r}}<br />
we get
<br /> S\approx -k\int{P(x)lnP(x)}dx=...=(-\frac{k}{2})(1-ln(\frac{2}{\pi N}))\approx -\frac{k}{2} \\<br /> A=-\int S dT = \frac{1}{2}kT \\<br /> U=A+TS=\frac{1}{2}kT-\frac{1}{2}kT=0<br />
*A=free enegy; U=internal energy
So weird that U=0. Am I doing this wrong?? Thank you!
 
  • #20
Kelly Lin said:
View attachment 208865
I think this is more viable!
Suppose r of the N are oriented one way and the remaining N-r the other way. What would the total length be?

By the way, the expression on the right in b) cannot correct. The argument to exp() must be dimensionless, but x is a length. I would rewrite it by replacing x by x/l everywhere.
 
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  • #21
haruspex said:
Suppose r of the N are oriented one way and the remaining N-r the other way. What would the total length be?

By the way, the expression on the right in b) cannot correct. The argument to exp() must be dimensionless, but x is a length. I would rewrite it by replacing x by x/l everywhere.
The result will be x=Nl-(N-r)l=rl
Oh! Then the configuration will be \frac{N!}{r!(N-r)!}=\frac{N!}{(\frac{x}{l})!(N-\frac{x}{l})!}
But, x can also be (N-r)l so the configuration above have to be multiplied by 2.
However, in this point of view, we view each section independently as an arrow. In the real situation, polymers will always turn their direction in the end. So, I think my table is more viable, right?

Although it is repalced by x/l, my result is still weird.(I got U=0)
 
Last edited:
  • #22
Kelly Lin said:
In the real situation, polymers will always turn their direction in the end
If you say so, but the simple hairpin view does lead to the target expression. If you are not getting that please post your working.
 
  • #23
haruspex said:
If you say so, but the simple hairpin view does lead to the target expression. If you are not getting that please post your working.
I mean that I also cannot catch what the question wants. haha!
But my other questions are about internal energy! That's really weird, though…
 
  • #24
Kelly Lin said:
I mean that I also cannot catch what the question wants
You have the answer for qn a). For b), you need to divide by the total number of possible orientations of the N to get a probability. Are you familiar with Stirling's approximation for factorials?
For ease of algebra, I would work with r rather than x/l.
 
  • #25
Kelly Lin said:
The result will be x=Nl-(N-r)l=rl
Oh! Then the configuration will be \frac{N!}{r!(N-r)!}=\frac{N!}{(\frac{x}{l})!(N-\frac{x}{l})!}
But, x can also be (N-r)l so the configuration above have to be multiplied by 2.
However, in this point of view, we view each section independently as an arrow. In the real situation, polymers will always turn their direction in the end. So, I think my table is more viable, right?

Although it is repalced by x/l, my result is still weird.(I got U=0)
Shouldn't x be ##x=|(N-2r)l|##?
 
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  • #26
Chestermiller said:
Shouldn't x be ##x=|(N-2r)l|##?
Thanks, I forgot to check that.
 

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