https://ocw.mit.edu/courses/mathematics/18-02-multivariable-calculus-fall-2007/
This is where I first learned it close to 10 years ago. The lectures are a tad old but I think they are excellent assuming you would have the patience to go through it all. It is quite worth it if you do. I have never had trouble with visualising stuff or drawing intuitions in multivariate calculus thanks to this guy. The visualisations are just good old chalk-on-board though, nothing too fancy.
Also, I think visualisation may also be tied with understanding the applications of the math. The best visualisation of flux through a surface is gotten through studying it in terms of electric flux, gravitational flux or fluid flux.
Found this cool visualisation for fields that might help you out:
If you mention what concepts exactly you have trouble visualising, I might be able to help out more.
Of course there may be other excellent resources that use computer graphic animations and stuff elsewhere that maybe others could suggest.