Ribose and Deoxyribose - Most Common Form?

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SUMMARY

The discussion centers on the common forms of deoxyribose, specifically questioning whether the depicted structure is the most prevalent. It confirms that 2-deoxyribose is indeed the most common form due to stabilization from the double bond to oxygen. The enzyme ribonucleotide reductase plays a crucial role in the reduction of ribonucleotides to deoxyribonucleotides, utilizing a free radical process involving specific interactions at the C-2' and C-3' positions of ribose. The importance of enzyme binding and shape is emphasized in determining the regiochemistry of this reaction.

PREREQUISITES
  • Understanding of ribonucleotide reductase enzyme function
  • Knowledge of ribose and deoxyribose molecular structures
  • Familiarity with free radical chemistry
  • Basic biochemistry concepts related to nucleotides
NEXT STEPS
  • Research the mechanism of ribonucleotide reductase in detail
  • Study the structural differences between ribose and 2-deoxyribose
  • Explore the role of free radicals in biochemical reactions
  • Investigate the energetics of double bonds in organic molecules
USEFUL FOR

Biochemists, molecular biologists, and students studying nucleotide metabolism will benefit from this discussion, particularly those interested in enzyme mechanisms and sugar chemistry.

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Here is a drawing of Ribose and 2-deoxyribose.
My question is this the most common form of deoxyribose? Is it common to find 3 or 4 deoxyrybose?

My guess is that this is the most common because of stabilization from the double bond on the oxygen... but just want to double check. Thanks!

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The enzyme ribonucleotide reductace is responsible for the reduction reaction for the ribonucleotides. It consists of two domains (subunits). The reduction is a free radical process. One of the domains generates the free radical and the other binds to the ribose sugar and accepts the free radical. The free radical (a sulfhydryl group) abstracts a hydrogen from the C-3' of the ribose and promotes the release of the hydroxyl on the C-2' of the ribose. The C-2' position accepts a hydride from the enzyme and pushes the radical back to the C-3' position which is reprotonated by the same sulfhydryl that produced the radical in the first step.

The double bond to oxygen is important to the energetics but the enzyme binding/shape is important to the regiochemistry.
 
chemisttree said:
The enzyme ribonucleotide reductace is responsible for the reduction reaction for the ribonucleotides. It consists of two domains (subunits). The reduction is a free radical process. One of the domains generates the free radical and the other binds to the ribose sugar and accepts the free radical. The free radical (a sulfhydryl group) abstracts a hydrogen from the C-3' of the ribose and promotes the release of the hydroxyl on the C-2' of the ribose. The C-2' position accepts a hydride from the enzyme and pushes the radical back to the C-3' position which is reprotonated by the same sulfhydryl that produced the radical in the first step.

The double bond to oxygen is important to the energetics but the enzyme binding/shape is important to the regiochemistry.

Thanks! outstanding
 

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