The interesting thing I have found about QM is to start with it seems very anti intuitive, but after a while, when you understand some of the more modern ways of viewing it, such as the most reasonable probability theory that allows continuous transformations, things seem a lot more reasonable.
The argument goes something like this. Suppose we have a system in 2 states represented by the vectors [0,1] and [1,0]. These states are called pure. These can be randomly presented for observation and you get the vector [p1, p2] where p1 and p2 give the probabilities of observing the pure state. Such states are called mixed. Now consider the matrix A that say after 1 second transforms one pure state to another with rows [0, 1] and [1, 0]. But what happens when A is applied for half a second. Well that would be a matrix U^2 = A. You can work this out and low and behold U is complex. Apply it to a pure state and you get a complex vector. This is something new. Its not a mixed state - but you are forced to it if you want continuous transformations between pure states.
QM is basically the theory that makes sense out of pure states that are complex numbers. There is really only one reasonable way to do it - by the Born rule (you make the assumption of non contextuality - ie the probability is not basis dependent, plus a few other things no need to go into here) - as shown by Gleason's theorem. But it can also be done without such high powered mathematical machinery:
http://arxiv.org/pdf/quant-ph/0101012.pdf
In my opinion intuition has a lot to do with understanding, familiarity and the way you view things.
Thanks
Bill