Apply in the sense that statistical mechanics applies to a single glass of water. One uses ensemble expectation values for the single quantum system [and, according to Gibbs,
nonphysical, imagined repetitions to justify the ensemble language for the single use case] to assign a temperature and other things that can be measured.
Single, nonrepeated measurements of temperature, pressure and volume can be used to check the predictions of quantum mechanics in equilibrium. These measurements have nothing to do with any of the mock measurements of identically prepared systems discussed in the traditional
interpretations of quantum mechanics.