Jilang said:
I think what I am struggling with is that an infinite number of different fields are permeating the universe at all times. Are they just mathematical constructs (like virtual particles)?
There are a number of basic local fields (those in the standad model and gravity). All other fields are composite fields. In any field theory one can create lots of local composite fields (technically these form the Borchers class of local fields of a theory). In a free QFT, the most general composite local field is given by a linear combination of normally ordered products of local field operators at the same space-time position ##x##. A few of these appear in the Lagrangian density defining a QFT.
In general, composite fields are just mathematical constructs. But some of them have a physical interpretation since they are measurable in an operational sense; the most important ones are the composite fields corresponding to bound states and the associated currents.
A fully defined quantum field theory assigns in each state expectation values of all nonlocal products of the basic fields (technically correlation functions), from which the composite local field expectations (which in the cases mentioned are in principle measurable) are obtained by a limiting procedure (technically through Haag-Ruelle theory). An effective theory concentrates on the few fields and currents relevant at a particular description level for a particular purpose.
So people studying entanglement of buckyballs ignore everything except for the buckyballs. They even dispense with the fields (needed in case the number of buckyballs is not certain) and just look at 1- and 2-particle states where the particle is a buckyball. It would be overkill (and distract from the real physics in buckyball experiments) to represent the buckyballs in terms of quarks and leptons.
For the same reason, engineers concerned with everyday physics ignore the (far too detailed) description of flowing water, say, in terms of quantum fields and represent water instead by a few classical fields, for example energy density, momentum density, and temperature. Each applications therefore has its own effective description, but from a fundamental point of view all these are expectations of certain composite fields.