As far as I know, irradiated meat won't be on our shelves for some time in the future because of the negative perception of anything involving (ir)radiation. As for pasteurised milk and yoghurt on European supermarket shelves?; I have never come across this. The only unchilled milk available here is UHT which, if I remember correctly, is sterilised at about 115 deg C rather than pasteurised.
The accelerated development of antibiotic resistance among pathogenic bacteria is nothing short of alarming. We coukd soon be looking at providing all treatment in home as hospitals become no go areas. We briefly fooled ourselves that we had conquered infection by pathogenic bacteria, but the evidence was already there back in the late 70s that the bugs were getting the better of us.
The huge dose of microbes in our gut (I guess we have about 10 billion bugs per gram in there) do actually cause immune responses, but for the most part we have acclimatised to them and ideally the bugs in our systems are at worst commensal and at best beneficial. We see the immune response really coming into play when we accidentally consume some undesirable microbes that run riot in our intestines and promote all manner of unpleasant sypmptom, usually culminating in an evacuation of some sort. One of the reasons we are able to tolerate such a high number of bugs is that the gut acts like a continuous fermenter, constantly excreting microbes and their end products at one end as we feed them from the other. Otherwise the consequences would be catastrophic. And we also see bugs that live within this complex ecosystem get out of control every now and then, especially when we are immunosuppressed or have used antibiotics to accidentally wipe out many of the beneficial microbes that keep these guys under control. I guess a good example of this is the current situation with Clostridium difficile, where a relatively harmless resident of an otherwise healthy gut microflora gets an opportunity to proliferate and causes all manner of problems.
There are a few significant contributors to our relative success in coping with diseases in the 20th century. Some (perhaps all) of these have already been mentioned but I thought I'd summarise them anyway. Separation of drinking water from sewage, treatment of drinking water, pasteurisation of milk, large scale vaccination against the infectious disease of childhood, the development of antibiotics, separation of cooked and raw food and an understanding of the mechanism by which food can be best preserved (including fermentation). Have I left something out?