I've no idea why I've ended up sort of defending c-section but there always seems to be this natural = nice bias to discussions like this when there is nothing particularly nice about a natural birth in humans. We have to recognise that human childbirth is a very risky business and its only in recent times that the major risks have been managed successfully. The large human brain and therefore the head cause considerable problems during childbirth, even though the babies skull isn't fused, in fact the child is delivered in a much less mature form than most animals and is highly vulnerable.
In terms of natural births without modern medicine, in 1850 after they started recording deaths, in every 1000 women 55 would die at delivery or in the post-partum period (1 month up until 1900), this risk was for each child. For children in 1850 its estimated that globally around 50% of live births would have died before their 5th birthday and half of these deaths would occur at birth or in the post partum period. The current figures in the west are less than 0.5% (
https://ourworldindata.org/child-mortality) with the major reductions only starting in the 1930's.
Generally a lot of opinions are influenced by peoples biases, much like the issue of breast feeding, so to respond to some of the issues I would suggest some qualifiers.
Any trauma initiates and inflammatory response including vaginal births, we need to know if this is significant.
C-sections are associated with an increased hospital stay of on average 1 day, wound problems in young healthy women are very uncommon.
Placental problems are far more likely in vaginal births and are one of the principle reasons for C-sections, longer term risks increase with the number of births.
The evidence doesn't support the idea of increased problems in breast feeding or mood disorders.
For the baby these risks occur in all deliveries and some are more likely to be due to the complications that lead to the c-section, this is particularly true of cognitive effects. Currently around 1 in 4 births are by c-section but only 1 in 20 are actually pre planned.
I think we need to be very wary of the claims around the microbiome which may be more a fashion than anything else. Currently most authorities seem to advise against things like vaginal seeding because of a theoretical risk of increasing infections. The vagina is not normally the stomping ground for the early gut colonisers and this colonisation is a closely controlled process, the breast is probably a better source. Most of the claims about the positive effects of our microbiome are based on a very limited understanding and there are increasing reports of harms. The bacteria are a different species, they are not around for our benefit, we have evolved together and learned to tolerate each other but only in certain circumstances. Many of our colonists become serious pathogens in our body.
There is a nice table of the evidence around various risks in this link its worth noting the the quality is generally considered poor, though the level of risk is considered very low. Nice have also produced a specific care pathway this year, (2018) but this doesn't provide the detail.
https://www.nice.org.uk/guidance/cg...lanned-CS-compared-with-planned-vaginal-birth