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friend said:Then what is the physical mechanism that implements the self-reference used in GIT?
I think you're confused about Godel's incompleteness theorem. The PROOF involves self-reference, but the conclusion has nothing to do with self-reference.
For example, we don't know how to answer the following question:
Can every even integer greater than 2 be written as the sum of two prime numbers?
That question doesn't involve self-reference. But we don't know how to solve it. (For that particular question, there is no proof one way or the other as to whether it is solvable using standard mathematics, or not.)
A general class of problems is this: Given a polynomial equation with integer coefficients, can we decide whether it has integer solutions? That general problem is known to be unsolvable.
It doesn't have anything to do with self-reference, other than the fact that self-reference is used to prove incompleteness.