How to calculate species abundance and diversity

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Discussion Overview

The discussion revolves around calculating species abundance and diversity using the Shannon index, specifically in the context of a homework problem involving a sample population of various species. Participants seek clarification on the formulas and their application.

Discussion Character

  • Homework-related
  • Mathematical reasoning

Main Points Raised

  • One participant presents a sample population and asks for the appropriate formulas to calculate species abundance and diversity.
  • Another participant confirms the formula for the Shannon index and clarifies the notation, particularly the use of the natural logarithm.
  • A participant expresses uncertainty about how to apply the formula and whether to include specific symbols in their calculations.
  • Further clarification is provided regarding the summation in the formula and the definitions of terms such as species abundance and relative abundance.
  • One participant notes that the equation for a specific species (ants) is only part of the overall calculation for the Shannon index.
  • A mathematician in the discussion acknowledges their lack of expertise in the biological context but provides a link to an article about diversity indices.

Areas of Agreement / Disagreement

Participants generally agree on the formula for the Shannon index and its components, but there is uncertainty regarding the application of the formula and the specific calculations involved. The discussion remains unresolved regarding the complete application of the formula to the provided data.

Contextual Notes

Participants express uncertainty about how to properly apply the Shannon index formula, including the summation process and the interpretation of variables. There is also a lack of consensus on how to proceed with the calculations based on the given sample data.

blicker
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Homework Statement


This is the sample population taken along a 5m transect:
ants:9
grasshoppers:1
pill bugs:4
spiders:1


Homework Equations


What formulas would i use to calculate the species abundance and diversity?


The Attempt at a Solution


I only know this formula H'=-\Sigma (n_{}i/N)xIn(n_{}i/N) and i don't know what to do with this formula.
 
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Hi blicker! :smile:

Can it be that your formula is actually:
3799228b95da61aa2eca76e4132f0aa2.png

where "ln" is the natural logarithm (and also a button on your calculator), and where ni is the number of individuals of species i?

See: http://en.wikipedia.org/wiki/Shannon_index
 
yes that's it! but i don't know what numbers go where or how to calculate it. like would i include the sigma symbol and the letters above and below it?
 
The sigma symbol indicates that you have to sum.
So:
H'=-\sum_{i=1}^S {n_i \over N} \ln {n_i \over N} = -({n_1 \over N} \ln {n_1 \over N} + {n_2 \over N} \ln {n_2 \over N} + {n_3 \over N} \ln {n_3 \over N} + {n_4 \over N} \ln {n_4 \over N})

From wiki:
* ni The number of individuals in species i; the abundance of species i.
* S The number of species. Also called species richness.
* N The total number of all individuals
* pi The relative abundance of each species, calculated as the proportion of individuals of a given species to the total number of individuals in the community: n_i\over N
 
so would the equation for ants look like this:
-(9/15)In(9/15)
 
blicker said:
so would the equation for ants look like this:
-(9/15)In(9/15)

Well, Shannon's index specifies to sum all the terms.
So what you mention is only part of H'.

Btw, it is ln ("logarithmus naturalis").But I can't really tell you what your problem asks.
I'm not studying whatever science you're studying - I'm a mathematician.

I did find this article about diversity: http://en.wikipedia.org/wiki/Diversity_Index
And apparently n_i is the "species abundance".
Furthermore p_i={n_i \over N} is the "relative species abundance".
 
well thanks for your help anyway.
 

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