Measuring Mass of DNA Using a Vibrating Cantilever

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SUMMARY

The discussion focuses on measuring the mass of DNA molecules using a vibrating cantilever, specifically a silicon cantilever with a gold dot that vibrates at a frequency of 13 MHz. When DNA molecules bind to the gold dot, the oscillation frequency decreases by 57 Hz, allowing for mass calculations. The mass of the cantilever is modeled as a block of mass 1/3 M attached to a spring, and the relationship between frequency and mass is established through the equations w = 2πf and f = √(M/k)/2π. The key challenge is deriving the mass of the DNA from the change in frequency and understanding the mathematical relationships involved.

PREREQUISITES
  • Understanding of simple harmonic motion and oscillation frequency
  • Familiarity with the equations of motion for a vibrating cantilever
  • Basic knowledge of mass-spring systems and their modeling
  • Proficiency in calculus, particularly differentiation and ratios
NEXT STEPS
  • Study the principles of nano-oscillators and their applications in mass measurement
  • Learn about the mathematical modeling of cantilevers in oscillatory motion
  • Explore the derivation of frequency-mass relationships in vibrating systems
  • Investigate experimental techniques for measuring small mass changes in biological samples
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Researchers in biophysics, engineers working with nano-scale devices, and students studying mechanical oscillations and their applications in molecular biology.

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Homework Statement



It has recently become possible to "weigh" DNA molecules by measuring the influence of their mass on a nano-oscillator. Figure shows a thin rectangular cantilever etched out of silicon (density 2300 {\rm kg/m^3}) with a small gold dot at the end. If pulled down and released, the end of the cantilever vibrates with simple harmonic motion, moving up and down like a diving board after a jump. When bathed with DNA molecules whose ends have been modified to bind with gold, one or more molecules may attach to the gold dot. The addition of their mass causes a very slight-but measurable-decrease in the oscillation frequency. A vibrating cantilever of mass M can be modeled as a block of mass {\textstyle{1 \over 3}}\,M attached to a spring. (The factor of {\textstyle{1 \over 3}} arises from the moment of inertia of a bar pivoted at one end.) Neither the mass nor the spring constant can be determined very accurately-perhaps to only two significant figures-but the oscillation frequency can be measured with very high precision simply by counting the oscillations. In one experiment, the cantilever was initially vibrating at exactly 13 {\rm MHz}. Attachment of a DNA molecule caused the frequency to decrease by 57 {\rm Hz}.

What was the mass of the DNA?

The dimensions of the beam are 4000nm, 400nm and 100nm

Homework Equations



w = 2\pif
f = w/2\pi

The Attempt at a Solution



I calculated the mass of the beam to be 3.68 x 10-16 kg. I worked the f = w/2\pi equation to get f= sqrt(M/k)/2\pi and then f + \Deltaf = sqrt[(M+\DeltaM)/k]/2\pi.

Then I took the derivative of w = sqrt(M/3k) to get dw = 0.5w(dM/M) after simplification. I just don't know where to go with it. I know I need to set up a ratio but I just can't put it together in my head. Any ideas?

Any help is greatly appreciated!
 
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Try to calculate df/dM and express the result in terms of the initial frequency and mass.
 


How do I do that though? I calculated df/dM from f = sqrt
(M/k)/2pi to get (1/4kpi)*sqrt(M/k)*(k/M) but I don't know where to go with this. Did I do the right thing? I know I'm missing a key piece in my understanding but I can't figure out the connection.
 

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