On covariance of the Lagrange equations

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Here is a sketch of deduction of the Lagrange equations by means of the covariance argument. I believe that it is a suitable substitute for the archaic terminology that is employed in most textbooks.

Assume we have ##\nu## particles with masses ##m_1,\ldots,m_\nu## and with position vectors $$\boldsymbol r_i=(x^{3(i-1)+1},x^{3(i-1)+2},x^{3(i-1)+3})\in\mathbb{R}^3,\quad i=1,\ldots,\nu.$$
Thus the position of the system is characterized by a vector ##x=(x^1,\ldots,x^m)^T\in\mathbb{R}^m,\quad m=3\nu.##
Assume also that the system is restricted by ideal holonomic constraints so that ##x=x(t,y)## where ##y=(y^1,\ldots,y^r)## are the local coordinates (generalized coordinates) on a smooth ##r-##dimensional manifold ##Y## and ##y\mapsto x(t,y)## is a smooth embedding of ##Y## into ##\mathbb{R}^m## for each ##t##.
The Lagrange-D'Alembert principle is
$$\sum_i(m_i\boldsymbol{\ddot r_i}-\boldsymbol F_i,\delta \boldsymbol r_i)=0.\qquad (1)$$
Here ##\boldsymbol F_i## are the given forces.
Formula (1) can be rewritten as follows
$$([\mathscr T]_j-f_j)\frac{\partial x^j}{\partial y^s}=0,\qquad (2) $$
where ##f=(f_1,\ldots,f_m)=(\boldsymbol F_1,\ldots,\boldsymbol F_\nu),##
$$\mathscr T=\frac{1}{2}\dot x^TG\dot x,\quad G=\mathrm{diag}(m_1,m_1,m_1,\ldots,m_\nu,m_{\nu},m_{\nu});$$
and
$$[\mathscr T]_j=\frac{d}{dt}\frac{\partial \mathscr T}{\partial \dot x^j}-\frac{\partial \mathscr T}{\partial x^j}.$$
Now employ the covariance:
$$[\mathscr T]_j\Big|_{x=x(t,y)}\frac{\partial x^j}{\partial y^s}=[T]_s,\qquad (3)$$
where ##T(t,y,\dot y)=\mathscr T\mid_{x=x(t,y)}.##

Formula (3) is very general it holds for any smooth ##\mathscr T=\mathscr T(t,x,\dot x).##
It is like to accomplish the pullback of an 1-form from the manifold ##\mathbb{R}^m## to the manifold ##Y##.

Thus (2) takes the form
$$[T]_s=Q_s,\quad Q_s=f_j\frac{\partial x^j}{\partial y^s}.$$
 
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I'm a bit confused by the conditions on the existence of coordinate basis given by Frobenius's theorem. Namely, let's take a n-dimensional smooth manifold and a set of n smooth vector fields defined on it. Suppose they are pointwise linearly independent and do commute each other (i.e. zero commutator/Lie bracket). That means they span the entire tangent space at any point and since commute, they define a local coordinate basis. What does this mean? Well, starting from any point on the...

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