Borek
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For each SINGLE ray/photon/wave - whatever we decide to call it - fields vibrate in such a way that B is perpendicular to E and both are perpendicular to K. But if we take collimated light (that is, all have the same K) it doesn't mean B of one photon is parallel to B of another photon - they can be at any angle. We can filter the light to separate all photons of parallel Bs (this will also make their Es parallel) - that will be what we call polarized light.