Hydrogen bonding force problem

In summary, the base pair adenine and thymine in a DNA molecule is held together by two hydrogen bonds. Using point charges and the given information, the magnitude of the net electric force along the hydrogen bond was calculated to be 3.99x10^-10 N, with two repelling forces between N&O and H&C and two attractive forces between N&C and H&O. The values for N, H, O, and C were corrected to account for the charge of an electron.
  • #1
StormPix
5
0

Homework Statement



In a DNA molecule, the base pair adenine and thymine is held together by two hydrogen bonds (see figure below).

16-figure-05.gif


Let's model one of these hydrogen bonds as four point charges arranged along a straight line. Using the information in the figure below, calculate the magnitude of the net electric force along this hydrogen bond.

16-p-019.gif


Homework Equations



F=(k*|q1|*|q2|)/r^2

The Attempt at a Solution



Since we are looking at 4 point charges, we need 4 equations. They are:

k = 8.99x10^9 (N*m^2)/C^2
N = -3x10^-10 C
O = -4x10^-10 C
H = 3x10^-10 C
C = 4x10^-10 C

F_no = (k*|N|*|O|) / ((3x10^-10 m)^2) = -1.20x10^10 N -> negative as repelling force
F_nc = (k*|N|*|C|) / ((4.2x10^-10 m)^2) = 6.12x10^9 N
F_ho = (k*|H|*|O|) / ((1.8x10^-10 m)^2) = 3.33x10^10 N
F_hc = (k*|H|*|C|) / ((3x10^-10 m)^2) = -1.2x10^10 N -> negative as repelling force

Since we are asked for find the magnitude of the net electric force, we need to sum all 4 forces together.

ΣF = F_no + F_nc + F_ho + F_hc = 1.54x10^10 N

... Opps. So I must have done something wrong.

The hint given was "You need 4 eqns: pair N&O, N&C, H&O, H&C and use the charges & distances appropriate for each pair to get a net magnitude between the bases." ... which to my knowledge I have here.

So not sure what I did wrong. Any help would be much appreciated.
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  • #2
StormPix said:
N = -3x10^-10 C
O = -4x10^-10 C
H = 3x10^-10 C
C = 4x10^-10 C

Check these numbers. What does "e" stand for in the picture?
 
  • #3
I'm not following your arithmetic.
It would be clearer to leave out k and the unit charge of an electron as common factors to bring in later. E.g. for N::O write -0.3*0.4/(0.12+0.18)2.
 
  • #4
TSny said:
Check these numbers. What does "e" stand for in the picture?

Ah! Small but critical oversight on my part. "e" meant electron ... so that each base pair is a factor .3 or .4 charge of an electron.

This would make:

N = (-.3)(1.602x10^-19 C) = -4.806x10^-20 C
H = (.3)(1.602x10^-19 C) = 4.806x10^-20 C
O = (-.4)(1.602x10^-19 C) = -6.408x10^-20 C
C = (.4)(1.602x10^-19 C) = 6.408x10^-20 C

Using these new values for N, H, O, C I get

F_no = -3.08x10^-10 N -> repelling force
F_nc = 1.57x10^-10 N
F_ho = 8.55x10^-10 N
F_hc = -3.08x10^-10 N -> repelling force

Such that,

ΣF = 2*(-3.08x10^-10 N) + 1.57x10^-10 N + 8.55x10^-10 N = 3.99x10^-10 N which ended up be the correct answer.

Thanks a lot.
 
  • #5


It seems like you have correctly set up the equations for each pair of charges and calculated the individual forces. However, to find the net electric force, you need to take into account the direction of the forces as well. In this case, since you have two forces acting in opposite directions (F_no and F_hc), you need to subtract them from the total sum, rather than simply adding them. This will give you a net electric force of 1.54x10^10 N in the direction from N to C.
 

1. What is a hydrogen bonding force problem?

A hydrogen bonding force problem refers to the difficulty in accurately predicting and measuring the strength of hydrogen bonds, which are weak intermolecular forces that occur between molecules containing hydrogen and a highly electronegative atom such as oxygen, nitrogen, or fluorine.

2. Why is understanding hydrogen bonding force important?

Hydrogen bonding plays a crucial role in many biological and chemical processes, such as protein folding, DNA replication, and the structure of water. Understanding the strength and behavior of hydrogen bonds is essential for understanding these processes and developing new materials and technologies.

3. What factors affect the strength of a hydrogen bond?

The strength of a hydrogen bond is influenced by several factors, including the electronegativity of the atoms involved, the distance between the hydrogen and the electronegative atom, and the angle between the atoms. Additionally, the presence of other molecules or functional groups can also impact the strength of a hydrogen bond.

4. How is the strength of a hydrogen bond measured?

The strength of a hydrogen bond is typically measured in terms of its bond length and bond energy. Bond length refers to the distance between the hydrogen and the electronegative atom, while bond energy is the amount of energy required to break the bond. Experimental techniques such as X-ray crystallography and spectroscopy can be used to determine these values.

5. What are some current challenges in studying hydrogen bonding forces?

One of the main challenges in studying hydrogen bonding forces is the complexity of these interactions, which can be affected by many factors such as solvent effects, temperature, and molecular flexibility. Additionally, accurately predicting the strength of hydrogen bonds in different environments remains a challenge for computational methods.

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