suprised is a working string theorist and I am not, so you should listen accordingly. But I'll still make a few more comments.
dhillonv10 said:
if calabi-yau are stable and flop transitions preserve the observable physics as Brian Greene showed in his paper, can it be that flop transitions happen in nature all the time?
Brian Greene used mirror symmetry to find an equivalent perspective where topology change doesn't happen. But in that mirror perspective, the geometry still changes, so the observable physics would still be affected.
Consider an ellipse. It has two parameters - the lengths of the two axes. These are its "moduli", and the moduli space for an ellipse is the set of all ellipse shapes. In an extreme case where one modulus goes to zero, it just flattens into a line.
Similarly, a CY has a lot of parameters which specify its size and shape, the moduli, and the moduli space for a CY consists of all the different shapes that the CY can end up in, and there are boundary cases (like the ellipse getting squashed) where the CY changes topology and becomes a different CY.
Like suprised says, those papers from 1993 were not looking at physical causes of topology change. They were just varying the moduli, like turning a dial, and seeing how the observable physics changed. One phenomenon was that you could take the moduli to values that made no sense geometrically - because they implied zero or negative lengths in the CY - but they still defined a working field theory. And in 1993 they showed that these cases
do have a geometrical interpretation, in terms of another CY - you've moved into the moduli space of a CY with a different topology.
suprised makes an important technical point that all these CYs are thought to be stable; they shouldn't have any tendency to change. However, one consequence of the smooth transition between topologies, is that you can have a solution to string theory in which the topology of the extra dimensions varies in
space. In effect, you'd have one CY everywhere on one side of the universe, the other CY everywhere on the other side of the universe, and a transition zone in the middle where you had CYs balanced on the transition point. (No one is proposing that the observable universe is like that, although there might be such boundaries out of sight, beyond our "Hubble volume".)
And then in some of Brian Greene's later papers he
does develop models of topology change over time. http://arxiv.org/abs/1011.6588" , though not about topology change, can give you an idea of what's going on. It talks about the interplay between fluxes, cycles, and branes. The fluxes are lines of force in nongeometric fields (ultimately derived from strings) which encircle topological cycles in the CY. The amount of flux around a cycle constrains the size (e.g. radius) of the cycle, and the amount of flux can change by creation of a brane, but this costs energy. So those are the interacting ingredients in CY geometric change, and when the geometric change becomes large enough, it turns into topology change. Everyone assumes that the universe has settled into a highly stable state now, where these factors are all in a balance that's very hard to disturb. But we have to develop models where this is demonstrably the case, and where the observable physics matches the observed physics. And that's some of what string theorists are currently trying to do.