RNA coding sequence for proteins

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SUMMARY

The discussion centers on the coding sequences of RNA and their relationship to proteins, specifically addressing the directionality of nucleotide sequences. It establishes that DNA sequences, such as AATGTA, code for proteins, while their inverses, like ATGTAA, do not typically code for proteins due to the necessity of reading in a specific 5' to 3' direction. The conversation highlights the importance of codons, including start and stop codons, and introduces concepts like dead-end codons, termination codons, and nonsense codons, which can mislead interpretations of nucleotide sequences.

PREREQUISITES
  • Understanding of DNA and RNA structure, including nucleotide composition
  • Knowledge of codon functions, including start and stop codons
  • Familiarity with the process of DNA replication and the role of DNA polymerase
  • Concept of directionality in nucleic acid sequences (5' to 3' orientation)
NEXT STEPS
  • Research the role of DNA polymerase in DNA replication
  • Study the significance of codons in protein synthesis
  • Explore the concept of nonsense mutations and their effects on protein coding
  • Learn about the mechanisms of RNA transcription and translation
USEFUL FOR

Students of molecular biology, geneticists, and anyone interested in understanding the fundamentals of protein coding and the intricacies of nucleic acid sequences.

Phil Core
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Simplistic Example
Given - DNA - RNA AATGTA codes for a protein.

1. Does the inverse ATGTAA usually/ever code for a protein?
2. Does the reciprocal RNA TTACAT usually/ever code for a protein?
 
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RNA does not have "T", it has uracil, "U". ACTG are the nucleotides for DNA, "ACUG" for RNA
DNA overall has a "start end, 5 prime" and a "finish end, 3 prime". Groups of three nucleotides are called codons, like in your example.

There are start codons and stop codons. So the direction of the nucleotide sequence to interpret has a specific direction to it for a protein or polypeptide.

For example: DNA copying (replication)
DNA polymerase adds nucleotides to the deoxyribose (3') ended strand in a 5' to 3' direction. Lagging strand is synthesised in fragments. Nucleotides cannot be added to the phosphate (5') end because DNA polymerase can only add DNA nucleotides in a 5' to 3' direction. So a given set of codons has direction to it dictated overall by 5 prime- 3 prime, and stop and start codons.

So your question needs a tune up. There is direction, plus codons for stop and start.

A very misleading answer to the question as asked is yes. This ignores some combinations of nucleotide triplets could be a codon when "read forwards" and something else when "read backwards", may be a so-called dead end codon. Other names for these "garbage" triplets are termination codon or nonsense codon. I like "dead-end" for teaching.
 
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Sorry I can not even get the basics correct. You are a good man Jim and I appreciate your answer. You made things a lot clearer for me.
 
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