What is strain? Why does DNA coil upon itself?

In summary: Overall, supercoiling is a manifestation of structural strain in DNA. This strain is usually a result of underwinding or overwinding of the DNA double helix. Supercoiling is not a random process, and the path of the supercoiling is largely prescribed by the torsional strain imparted to the DNA.
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Tyto alba
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I have been reading Lehninger's Principles of Biochemistry to understand DNA supercoiling (pg-930).

Supercoiling is the twisting of a DNA upon itself and this happens when the two helically wound strands of DNA are either underwound or overwound. The book says that this act of underwinding or overwinding generates a structural strain which is then accommodated by coiling of the DNA upon itself (supercoiling).

Here the word strain has been used in the way stress of mechanical physics would be used. I wonder if it means stress.

Besides I would like to know how underwinding or overwinding cause the DNA to coil upon itself.

Excerpts from the book:

DNA supercoiling is generally a manifestation of structural strain.

Most DNA are negatively supercoiled (which means that the supercoiling is left handed). In almost every instance, the strain is a result of underwinding of DNA double helix.

Supercoiling is not a random process; the path of the supercoiling is largely prescribed by the torsional strain imparted to the DNA...

Torsional strain, again is it talking about torsional stress?
 
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I can't supply a scientific answer, but anyone who is familair with a telephone cord knows what it will do if it is continually wound or unwound.

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Or an overwound elastic band. This is a YouTube video entitled DNA topology:

 
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Wikipedia says: In continuum mechanics, stress is a physical quantity that expresses the internal forces that neighboring particles of a continuous material exert on each other, while strain is the measure of the deformation of the material.

Double stranded DNA is only 2 molecules across, so it might make more sense to use the monomer to monomer deformation rather than forces. Overall under- or over-coiling might be more directly computed.

Some of the extra DNA turns might be used in the coiling of the DNA around nucleosomes.
In addition, there are unusual forms of DNA with different twist properties. These could add to or relieve supercoiling.
 

1. What is strain?

Strain refers to the amount of deformation an object experiences when subjected to stress. In the context of DNA, strain refers to the twisting and bending of the DNA molecule.

2. How does DNA coil upon itself?

DNA coils upon itself due to the coiling of its two strands around each other, forming a double helix. This coiling is caused by the interactions between the chemical bases of the DNA strands.

3. What is the importance of DNA coiling?

The coiling of DNA is important for compacting the long molecule into a smaller space, allowing it to fit inside the cell nucleus. It also plays a role in regulating gene expression and DNA replication.

4. What factors affect the degree of DNA coiling?

The degree of DNA coiling is affected by various factors such as the sequence of nucleotides, the presence of proteins and other molecules that interact with DNA, and environmental conditions such as temperature and pH.

5. How is DNA coiling related to genetic mutations?

The coiling of DNA can affect the accessibility of certain regions of the DNA molecule, which can influence the occurrence of genetic mutations. Changes in DNA coiling can also impact the accuracy of DNA replication, leading to potential mutations.

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