I guess what I was saying is that assuming the ball doesn't exit the Earth's atmosphere and head out into space, it's a good assumption/approximation that the final, net thermal energy generated by the pitching event is
approximately the same as the ball's initial kinetic energy.
Small differences can be attributed to (a) differences in the mass energies of any atoms that did undergo nuclear reactions, and (b) differences in the chemical energies of any molecules that underwent chemical reactions (such that the initial and final states have a net difference). Note that in both cases, the individual reactions that make up the net energy, may contain either positive or negative energy differences. (Edit: And then there is a little electromagnetic radiation energy which escapes into space, which I neglected to mention.)
But the vast majority will end up as thermal energy, even if there are intermediate steps in between (one example of an intermediate step could be
Kinetic Energy → electromagnetic potential energy (plasma) + some thermal energy → radiated electromagnetic energy + chemical potential energy + some more thermal energy → some additional radiated electromagnetic energy + even yet more thermal energy → thermal energy.)
Simon Bridge said:
Of course I know that - I'm saying that not all the kinetic energy is stopped/converted at the bat. Some of it (I'm suggesting: lots) continues with whatever the ball looks like at this stage past the bat.
Oh, yes, I agree. It will continue way past the bat (as BobG points out). But assuming the ball (or what's left of it) enters the ground or the side of a nearby hill* (within a roughly a kilometer or so), it still won't make it out of the blast area. A 4 megaton explosion is enough to devastate a modestly sized city.
*(And the hill/earth won't stop the energy transformation either, although it might introduce other intermediate steps such as
Kinetic energy → gravitational potential energy → back to kinetic energy → thermal energy.

)