Good question Accidentally. You are correct that a complete picture of early universe cosmology should involve fermions. The reason that scalars are generally relevant is because the inflaton is a scalar field. Scalars are the only fields that can possesses nonzero vacuum energy without breaking Lorentz invariance, and so they occupy an important place in early universe cosmology as sources of stress-energy that lead to accelerated expansion. During the early evolution of the universe before inflation, fermions were indeed in existence and contributed to the stress-energy of the universe. However, once inflation gets started, all pre-existing matter and energy gets massively redshifted (by a factor of at least 10^25) by the exponential expansion. The result is that the only relevant stress-energy component during inflation is the inflaton itself -- hence the singular emphasis on scalar field dynamics.
That said, the fermions and everything else aren't out of the story for good, since we know they had to make their return somehow after inflation ended. In the theory of reheating, the inflaton decays into all of the matter and energy comprising the observable universe. In order for the inflaton to decay into fermions, there must be some coupling between them. So, you are indeed correct that in simple reheating models, there must be a fermion-inflaton coupling. But, due to the overwhelming energy density of the inflaton relative to all other species during inflation, the coupling is not important during this epoch and does not affect the dynamics of the inflaton field or the universe. It is after inflation, when the inflaton decays, that these couplings become important.