Molecular machinery - Mechanism of action?

In summary, DNA replication is driven by phosphate transfers, which account for about half of all biochemical reactions. The energy required for these transfers comes from the hydrolysis of the nucleotide being formed. This process can be further explained by studying the reaction mechanism.
  • #1
csmcmillion
63
2
I'm watching a fascinating video about DNA replication:




Can someone explain briefly what the mechanism of action (and locomotion) is for all these little machines? Is it simply electric potential (due to ionization?) ?

Thanks
 
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  • #2
The quick explanation pretty much given in other vids at same site such as http://www.youtube.com/watch?feature=endscreen&NR=1&v=teV62zrm2P0

Otherwise any book of molecular biology.

In brief to your question what drives it, in the immediate you could say it is free energy of posphoanhydrides in one or other kind of phosphate transfer to form phophodiesters in particular. If you ask how the phophoanhydrides are formed they do go back in the end to a sort of transmembrane potential difference but that is not the only mechanism. Others involve yet other purely chemical phosphate group transfers. Phosphate transfers must be about half of all the reactions of biochemistry, and if not they seem like it.

Read a book, your question cannot really be answered in a post.
 
  • #3
Basically the energy required is derived from the hydrolysis of the to be formed nucleotide itself. You can check the reaction mechanism here.
wiki.cstl.semo.edu/agathman/DNA polymerase.ashx
 

1. What is molecular machinery and how does it work?

Molecular machinery refers to the complex network of biological molecules that work together to carry out essential functions within a cell or organism. This machinery includes molecules such as proteins, enzymes, and nucleic acids, which work together in a coordinated manner to perform tasks such as DNA replication, protein synthesis, and metabolism. The mechanism of action of molecular machinery involves a series of precise chemical reactions and interactions between these molecules, which are regulated by various factors such as enzymes and signaling pathways.

2. What is the role of molecular machinery in disease?

Molecular machinery plays a crucial role in many diseases, as disruptions or malfunctions in these processes can lead to various health problems. For example, mutations in genes that code for specific molecular machinery components can result in diseases such as cancer, where abnormal cell growth and division occur. Dysfunctional molecular machinery can also contribute to conditions like Alzheimer's disease, where protein misfolding and aggregation disrupt normal cellular processes.

3. How is the mechanism of action of molecular machinery studied?

The mechanism of action of molecular machinery is studied using a combination of experimental and computational approaches. Techniques such as X-ray crystallography, nuclear magnetic resonance (NMR) spectroscopy, and cryogenic electron microscopy (cryo-EM) allow scientists to visualize the structures of molecules and their interactions in great detail. Computational methods, such as molecular modeling and simulation, are also used to understand the dynamics and behavior of molecular machinery.

4. How does the mechanism of action of molecular machinery vary between different organisms?

The mechanism of action of molecular machinery can vary between different organisms due to evolutionary differences. While many of the essential processes and components of molecular machinery are conserved across species, there can be variations in the structures and functions of these molecules. For example, some bacterial enzymes may have different mechanisms of action compared to their human counterparts, allowing them to function in different environments and carry out different tasks.

5. Can molecular machinery be engineered or manipulated?

Yes, molecular machinery can be engineered or manipulated in various ways. Scientists can use techniques such as gene editing and protein engineering to modify the structures and functions of these molecules. This allows for the development of new treatments for diseases and the creation of novel biomaterials with unique properties. However, careful consideration must be given to potential ethical implications and safety concerns when manipulating molecular machinery in living organisms.

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