If I understand correctly, you have a hammer with known mass and velocity hitting an anvil with known mass. Everything rigidly attached to the anvil is part of the total anvil mass. The anvil is attached to shock mounts. The shock mounts support the system under test (SUT).
Are you interested in the impact force of the hammer against the anvil, or the force of the anvil against the shock mounts?
You should be able to estimate the force of the anvil against the shock mounts. Can you get some video of the hammer hitting the anvil? Regular 30 FPS video is too slow, but most cameras these days have a 120 FPS ("sport") mode that is better than nothing. After impact, does the hammer move with the plate, or does it bounce back? In either case, immediately after impact, the anvil has a velocity. You should be able to measure that velocity by stepping through the video one frame at a time.
At the same time, measure the compression of the shock mounts, and the velocity of the SUT at each frame. Make plots of anvil velocity and position vs time, SUT velocity and position vs time, and shock mount compression vs time.
You then take the derivative of the anvil and SUT velocities, and calculate the force from their respective masses. Find the data sheet for the shock mounts and calculate force vs deflection. You will now have three different estimates of force vs time. The difference between those estimates allows you to estimate the error.
If you want the impact force between the hammer and the anvil, you will need high speed video of the impact. The frame rate will need to be high enough to measure the duration of impact. That's the time that the hammer is in actual contact with the anvil. A frame rate of 1000 FPS will almost certainly be too slow, while 10,000 FPS will probably be faster than necessary. Find the duration of impact, then look up the equation for two masses impacting with a spring in between. Iterate the spring constant until the calculations match the video. You will then have the information to calculate the peak impact force. The hammer / anvil impact force is a useless number if you are interested in the effect on the SUT.
I used a similar method to find out why lugs 108 and 110 in the figure below broke when the calculated strength was about 100 lbs, and the force was from a spring similar to the spring in a ball point pen. The figure is from US Patent Application 13/350544 with publication number 20130184139.
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