The one aligned orthogonal suffers no length contraction. But, from the station observer, light is following a zigzag path between the mirrors. Thus, the station observer sees the train clock 'tick' slower because of the longer light path. The longer light path is sqrt(L^2 + (vt)^2), L being distance between mirrors. This must equal distance light travels, so we have ct = sqrt(L^2 + (vt)^2) . Solving for t, we get tick of train clock as seen from station: (L/c)/sqrt(1-(v/c)^2).
Now, for horizontal clock, we have contracted length L' = L sqrt(1-(v/c)^2). Here the train clicks are asymmetric, seen from the station; the station observer sees the train observer treat the sum of the asymmetric clicks as two even clicks. For the station observer, for the click with light moving the same direction as the train, t0 = L'/(c-v); for the other click, t1 = L'/(c+v). If you work this out, you see that t0+t1 = 2(L/c)/sqrt(1-(v/c)^2), consistent with the clock rate for the orthogonal clock.